Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is menC [H]
Identifier: 229918090
GI number: 229918090
Start: 2322046
End: 2323116
Strand: Reverse
Name: menC [H]
Synonym: EAT1b_2370
Alternate gene names: 229918090
Gene position: 2323116-2322046 (Counterclockwise)
Preceding gene: 229918091
Following gene: 229918084
Centisome position: 77.44
GC content: 49.86
Gene sequence:
>1071_bases ATGATCAAACGTGCTGACCTTTCCATCGTCCCTTTGACTTTTAAACACCCGATCGTGACGGCACACGCCGTCTTATCTGT CCGAAGAACGCTCATCCTTCGTCTAGAGACCGTAGACGGTGTTGTCGGATACGGAGAAGGTGCTGCTTTTGAGACCCCTT GGTACACGGAAGAAACGACCCAATCGATGATTGATACGTCCAAATTGATTCTCAATTTACTGAAAGGGATGACGGTCACG ACGGACGTGTTTCCGAACTTGGTCTCATCTATCATCGGTCAGCGCATGGCAAAGGCGATGTGGGAAAGTGCGCTTTGGGA AATTGAAGCGACGCGTGCGAACAAATCACTCAAGTCATTCATTAGCGCCGGAGATTCCGTCTCTTGTGGACGAACAATCG GGATCGGGTTGCTGAATCAGACGATGAAATCCATTGAAACGGCATTAGCTGACGGATTCGAACGCATTAAATTAAAGGCA TCGCCTAATGAACTGCTTCCTGCCCTACGTGAGATTCGCGCGGTCTTCCCTGATGCGCCCCTCATGATTGATTTAAACGG AAGCGCGTCCGATCAACCGATGGAATGGTTCGAACAACTCGACACCTATCGGTTATTGATGATCGAACAACCGTACCCGA GCCGACAATTCACAAAATCAGCGGCTCTCCAAGCAAAACTCACGACCCCCATTTGTCTCGACGAATCGATCACGTCTTAT GACGACGTGGAAACGATGGCACAGCTCGGCGCGGGGAAGATTGTCAACATTAAACCCGCACGTGTCGGTGGGCTTAGCGA GGCGTTCCACATTCGAAAACACGGAACGCCATACTGGGTCGGTGGGATGTATGAATCCGGTATCGGAAGATATCATACGC TCTTGTTTGCTTCGTTAAGTGGCGCGAGCTTCCCTGCGGACATGTCGGGTACGAGCGCTTATTTCGAGCAAGATTTACTC GATATCCCGCTTGAAGTGGAGAATGGAAAGTTGACGCTTCCGGATTCCGTACAACCAGATTGGAATGTGATTGAACGGTT ACGCGAAGAAGTGATTACATTGCAAACATGA
Upstream 100 bases:
>100_bases TGGCTAAATATAAGCACCCGATCGCCATCCACCACGCACCGAATTTACCACGAAACGCGAACGGAAAATTAATGCGCCAT CGCTTAAAGGAGCTACTGCC
Downstream 100 bases:
>100_bases AAAAAGGTGCGGTTCACGAGAACCACACCTTTTTACGTTAACGGAACGATCCCGTTAACACTTCATATCCATCTTCTGTG ACAACAACTGTATGCTCGAA
Product: Mandelate racemase/muconate lactonizing protein
Products: NA
Alternate protein names: OSB synthase; OSBS; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase; o-succinylbenzoic acid synthase [H]
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MIKRADLSIVPLTFKHPIVTAHAVLSVRRTLILRLETVDGVVGYGEGAAFETPWYTEETTQSMIDTSKLILNLLKGMTVT TDVFPNLVSSIIGQRMAKAMWESALWEIEATRANKSLKSFISAGDSVSCGRTIGIGLLNQTMKSIETALADGFERIKLKA SPNELLPALREIRAVFPDAPLMIDLNGSASDQPMEWFEQLDTYRLLMIEQPYPSRQFTKSAALQAKLTTPICLDESITSY DDVETMAQLGAGKIVNIKPARVGGLSEAFHIRKHGTPYWVGGMYESGIGRYHTLLFASLSGASFPADMSGTSAYFEQDLL DIPLEVENGKLTLPDSVQPDWNVIERLREEVITLQT
Sequences:
>Translated_356_residues MIKRADLSIVPLTFKHPIVTAHAVLSVRRTLILRLETVDGVVGYGEGAAFETPWYTEETTQSMIDTSKLILNLLKGMTVT TDVFPNLVSSIIGQRMAKAMWESALWEIEATRANKSLKSFISAGDSVSCGRTIGIGLLNQTMKSIETALADGFERIKLKA SPNELLPALREIRAVFPDAPLMIDLNGSASDQPMEWFEQLDTYRLLMIEQPYPSRQFTKSAALQAKLTTPICLDESITSY DDVETMAQLGAGKIVNIKPARVGGLSEAFHIRKHGTPYWVGGMYESGIGRYHTLLFASLSGASFPADMSGTSAYFEQDLL DIPLEVENGKLTLPDSVQPDWNVIERLREEVITLQT >Mature_356_residues MIKRADLSIVPLTFKHPIVTAHAVLSVRRTLILRLETVDGVVGYGEGAAFETPWYTEETTQSMIDTSKLILNLLKGMTVT TDVFPNLVSSIIGQRMAKAMWESALWEIEATRANKSLKSFISAGDSVSCGRTIGIGLLNQTMKSIETALADGFERIKLKA SPNELLPALREIRAVFPDAPLMIDLNGSASDQPMEWFEQLDTYRLLMIEQPYPSRQFTKSAALQAKLTTPICLDESITSY DDVETMAQLGAGKIVNIKPARVGGLSEAFHIRKHGTPYWVGGMYESGIGRYHTLLFASLSGASFPADMSGTSAYFEQDLL DIPLEVENGKLTLPDSVQPDWNVIERLREEVITLQT
Specific function: Converts SHCHC to OSB [H]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI87081876, Length=252, Percent_Identity=28.1746031746032, Blast_Score=75, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 - InterPro: IPR010197 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: =4.2.1.113 [H]
Molecular weight: Translated: 39306; Mature: 39306
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRADLSIVPLTFKHPIVTAHAVLSVRRTLILRLETVDGVVGYGEGAAFETPWYTEETT CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEHHCCEEECCCCCCCCCCCCCHHHH QSMIDTSKLILNLLKGMTVTTDVFPNLVSSIIGQRMAKAMWESALWEIEATRANKSLKSF HHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH ISAGDSVSCGRTIGIGLLNQTMKSIETALADGFERIKLKASPNELLPALREIRAVFPDAP HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHHHCCCCC LMIDLNGSASDQPMEWFEQLDTYRLLMIEQPYPSRQFTKSAALQAKLTTPICLDESITSY EEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHEEECCCCEEECCCCCCH DDVETMAQLGAGKIVNIKPARVGGLSEAFHIRKHGTPYWVGGMYESGIGRYHTLLFASLS HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHHCC GASFPADMSGTSAYFEQDLLDIPLEVENGKLTLPDSVQPDWNVIERLREEVITLQT CCCCCCCCCCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MIKRADLSIVPLTFKHPIVTAHAVLSVRRTLILRLETVDGVVGYGEGAAFETPWYTEETT CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEHHCCEEECCCCCCCCCCCCCHHHH QSMIDTSKLILNLLKGMTVTTDVFPNLVSSIIGQRMAKAMWESALWEIEATRANKSLKSF HHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH ISAGDSVSCGRTIGIGLLNQTMKSIETALADGFERIKLKASPNELLPALREIRAVFPDAP HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHHHCCCCC LMIDLNGSASDQPMEWFEQLDTYRLLMIEQPYPSRQFTKSAALQAKLTTPICLDESITSY EEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHEEECCCCEEECCCCCCH DDVETMAQLGAGKIVNIKPARVGGLSEAFHIRKHGTPYWVGGMYESGIGRYHTLLFASLS HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHHCC GASFPADMSGTSAYFEQDLLDIPLEVENGKLTLPDSVQPDWNVIERLREEVITLQT CCCCCCCCCCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377; 10194342 [H]