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The map label for this gene is yrdC [H]

Identifier: 229917860

GI number: 229917860

Start: 2085665

End: 2086246

Strand: Reverse

Name: yrdC [H]

Synonym: EAT1b_2138

Alternate gene names: 229917860

Gene position: 2086246-2085665 (Counterclockwise)

Preceding gene: 229917863

Following gene: 229917856

Centisome position: 69.54

GC content: 46.05

Gene sequence:

>582_bases
ATGCAAACAACAGTCGTTCCATTACTCATAATCGATGTCCAACAAGCCTTTCACGATCCAAGCTGGGGCAACCGCAACAA
TCCACAATGTGAAGAGAATATCGCACGGTTGATTGAAGCATGGGAAAATCATGATCAACCGATCATCTATGTCCAACATG
TCACGAACGTCCCAACCTCACTCTTCTATTTCAAAAAAGACGGTCATTTGTTCCAAGACTTCATTCAACCTCGTGAACAA
GATGTCATCTTAACGAAACAGGTGAATAGCGCCTTCATCGGAACGGACCTACAGGAACGACTTGAATCACTTGGTGCGAC
ACAGATGGTCATCACCGGATTAATCACGAACCATTGTGTCGAGACGACCGCACGGATGGCAGGAAACTTAGGATTCAACC
CAATCGTCGTCTCTGATGCGACGGCGACGTTCGACCGTCAATCGATCAGTGGGGCATGGATTCCCGCAACGGTCATCCAT
GATGTGTCGCTCGCTAGTCTAAATGAAGAATTTGCAACGATTCAAACGACGGAAACAATACTCCAATTCATTCAACAAAA
AGAAGTACAGCCCTTCTCATGA

Upstream 100 bases:

>100_bases
CTCTTTCTTAAGTCATTCGCTGAAACTTCCGTCAAACCTCTATGTATCTGTATTCCTCCGTTGCATACACTTGAAGTAAC
CAATTCAAAGGGGAATCAAC

Downstream 100 bases:

>100_bases
AGGCTGTACTTCTTTGATGTCATCTGAAGCGCATAAAGCGAACGCCTCAGGTATTCTTATCGATGTCGTATAAGACAAAT
CAGAGGGCGGTCCACGTATG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MQTTVVPLLIIDVQQAFHDPSWGNRNNPQCEENIARLIEAWENHDQPIIYVQHVTNVPTSLFYFKKDGHLFQDFIQPREQ
DVILTKQVNSAFIGTDLQERLESLGATQMVITGLITNHCVETTARMAGNLGFNPIVVSDATATFDRQSISGAWIPATVIH
DVSLASLNEEFATIQTTETILQFIQQKEVQPFS

Sequences:

>Translated_193_residues
MQTTVVPLLIIDVQQAFHDPSWGNRNNPQCEENIARLIEAWENHDQPIIYVQHVTNVPTSLFYFKKDGHLFQDFIQPREQ
DVILTKQVNSAFIGTDLQERLESLGATQMVITGLITNHCVETTARMAGNLGFNPIVVSDATATFDRQSISGAWIPATVIH
DVSLASLNEEFATIQTTETILQFIQQKEVQPFS
>Mature_193_residues
MQTTVVPLLIIDVQQAFHDPSWGNRNNPQCEENIARLIEAWENHDQPIIYVQHVTNVPTSLFYFKKDGHLFQDFIQPREQ
DVILTKQVNSAFIGTDLQERLESLGATQMVITGLITNHCVETTARMAGNLGFNPIVVSDATATFDRQSISGAWIPATVIH
DVSLASLNEEFATIQTTETILQFIQQKEVQPFS

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21710; Mature: 21710

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTVVPLLIIDVQQAFHDPSWGNRNNPQCEENIARLIEAWENHDQPIIYVQHVTNVPTS
CCCCCHHHHHEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCE
LFYFKKDGHLFQDFIQPREQDVILTKQVNSAFIGTDLQERLESLGATQMVITGLITNHCV
EEEECCCCCHHHHHCCCCCCCEEEEECCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHH
ETTARMAGNLGFNPIVVSDATATFDRQSISGAWIPATVIHDVSLASLNEEFATIQTTETI
HHHHHHHCCCCCCCEEEECCCHHHCHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
LQFIQQKEVQPFS
HHHHHHHCCCCCC
>Mature Secondary Structure
MQTTVVPLLIIDVQQAFHDPSWGNRNNPQCEENIARLIEAWENHDQPIIYVQHVTNVPTS
CCCCCHHHHHEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCE
LFYFKKDGHLFQDFIQPREQDVILTKQVNSAFIGTDLQERLESLGATQMVITGLITNHCV
EEEECCCCCHHHHHCCCCCCCEEEEECCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHH
ETTARMAGNLGFNPIVVSDATATFDRQSISGAWIPATVIHDVSLASLNEEFATIQTTETI
HHHHHHHCCCCCCCEEEECCCHHHCHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
LQFIQQKEVQPFS
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]