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The map label for this gene is ytbD [H]

Identifier: 229917705

GI number: 229917705

Start: 1939547

End: 1940725

Strand: Reverse

Name: ytbD [H]

Synonym: EAT1b_1982

Alternate gene names: 229917705

Gene position: 1940725-1939547 (Counterclockwise)

Preceding gene: 229917706

Following gene: 229917703

Centisome position: 64.69

GC content: 51.65

Gene sequence:

>1179_bases
ATGAAGACAAGCTCGCTCAGTCGAAGCGACTGGACTTTAGTTTTATCCCTATCCTTATTAACCTTCGTTCTCGGAACGAG
TGAATTTGTCATCGTCGGCATTTTGCCTGATATCGCAAGCGGTCTATCCATTTCCATCGCGACAGCAGGAAGTCTCGTAT
CGGCATTCGCCATCAGCTTTGCCGTCGGCACGCCAATCACGATGTCCTTGACGAGCCATCTTCCAAAACGTAAATTGATG
CTCGGCTTGACGATTCTCTTCACCGTCCTGAACTTATTAAGCAGTCTCGCTCCCATGTATGAGTGGTTACTCGTCTTGCG
AATGCTGACGGCCGTTGTCACAGGTGTCTTAATTTCGCTTGCCATGCTCGTTGCTAGCGAGAGCGTCCCTCCGGCAAAAC
GGGGTGTGGCCGTGTCCTTTATTTTCGGTGGATTCACAATGGCGAACGTGTTCGGGGTTCCGATCGGAACGTTCATCGGA
CAACAGGCAGGATGGGAGTCCACGTTTTGGTTGACGACTCTGCTCGGTGCAGTCGCCTGGATTGCCATTTATCGTGTCTT
GCCGAATCAATTGTCTCAAGAAAAAGCATCACTTCGTGAACAAATGGCACTCCTGACGAATCCGCGTATCTTGATCGCCT
TCTTAATTCCGGCGTTCGGTTTCGGGGCGACGTATGTCGTATATACGTATCTCGTGCCGATTTTAAAAGATGTCCTCGGG
GTACCGGTCGCTTGGGTCAGTCCGATTTTATTCGCCTACGGATTCATCTCGATCTTCAGTAATATCGCTGCCGGAAAGAT
CGCCAGTCACAATCCGATCGGACGCTTACGGTTCGTCTTTCTCGTCCAGGCGTTCGTCCTGGCCGCGTTGTTTGTGACGA
CGTCGAATGTGACGCTCGGTCTCCTCAATATCGCCCTCATGTCGTTCATGGCGATTTTATTGACGACATCGACTCAGATT
TATTTGATTGATTTGGCGGAGAAGTTCAATCCGAACGCCAAAGGTCTCGCTTCGTCACTTATGCCCGTGGCGAGTAACGT
CGGAATCGGACTTGGTTCCGCTCTTGGTGGTGTCGTCTACGCGACGAGCCCTATCATGACGCTCGCGCTCGTCGGTGGTT
TGGTCGCCCTCGTCACAGCCGGGTTGACCGCAGTCAGTTATTCACTCGATCAACGCTAA

Upstream 100 bases:

>100_bases
ACTTGGGAGAAAAGGGTTTTTCTTTTGGGGAAAATCTTGTAACGTGAGAGAAGACTGATGTCTAACTACTAATGAATGAA
ATAGAAAGAAGTGTTTGAAC

Downstream 100 bases:

>100_bases
AACGTGCGCACCTCGATGCAGGTGCGCACGTTTTTTATAACCATTCGAGAATCGCCGATAGGACTTCGTCGAGTTGTTCT
TTCGATGTGAGCGGACTTTC

Product: major facilitator superfamily MFS_1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MKTSSLSRSDWTLVLSLSLLTFVLGTSEFVIVGILPDIASGLSISIATAGSLVSAFAISFAVGTPITMSLTSHLPKRKLM
LGLTILFTVLNLLSSLAPMYEWLLVLRMLTAVVTGVLISLAMLVASESVPPAKRGVAVSFIFGGFTMANVFGVPIGTFIG
QQAGWESTFWLTTLLGAVAWIAIYRVLPNQLSQEKASLREQMALLTNPRILIAFLIPAFGFGATYVVYTYLVPILKDVLG
VPVAWVSPILFAYGFISIFSNIAAGKIASHNPIGRLRFVFLVQAFVLAALFVTTSNVTLGLLNIALMSFMAILLTTSTQI
YLIDLAEKFNPNAKGLASSLMPVASNVGIGLGSALGGVVYATSPIMTLALVGGLVALVTAGLTAVSYSLDQR

Sequences:

>Translated_392_residues
MKTSSLSRSDWTLVLSLSLLTFVLGTSEFVIVGILPDIASGLSISIATAGSLVSAFAISFAVGTPITMSLTSHLPKRKLM
LGLTILFTVLNLLSSLAPMYEWLLVLRMLTAVVTGVLISLAMLVASESVPPAKRGVAVSFIFGGFTMANVFGVPIGTFIG
QQAGWESTFWLTTLLGAVAWIAIYRVLPNQLSQEKASLREQMALLTNPRILIAFLIPAFGFGATYVVYTYLVPILKDVLG
VPVAWVSPILFAYGFISIFSNIAAGKIASHNPIGRLRFVFLVQAFVLAALFVTTSNVTLGLLNIALMSFMAILLTTSTQI
YLIDLAEKFNPNAKGLASSLMPVASNVGIGLGSALGGVVYATSPIMTLALVGGLVALVTAGLTAVSYSLDQR
>Mature_392_residues
MKTSSLSRSDWTLVLSLSLLTFVLGTSEFVIVGILPDIASGLSISIATAGSLVSAFAISFAVGTPITMSLTSHLPKRKLM
LGLTILFTVLNLLSSLAPMYEWLLVLRMLTAVVTGVLISLAMLVASESVPPAKRGVAVSFIFGGFTMANVFGVPIGTFIG
QQAGWESTFWLTTLLGAVAWIAIYRVLPNQLSQEKASLREQMALLTNPRILIAFLIPAFGFGATYVVYTYLVPILKDVLG
VPVAWVSPILFAYGFISIFSNIAAGKIASHNPIGRLRFVFLVQAFVLAALFVTTSNVTLGLLNIALMSFMAILLTTSTQI
YLIDLAEKFNPNAKGLASSLMPVASNVGIGLGSALGGVVYATSPIMTLALVGGLVALVTAGLTAVSYSLDQR

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=284, Percent_Identity=33.8028169014084, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1786595, Length=259, Percent_Identity=28.5714285714286, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787808, Length=361, Percent_Identity=26.5927977839335, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693198, Length=256, Percent_Identity=25.78125, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41450; Mature: 41450

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSSLSRSDWTLVLSLSLLTFVLGTSEFVIVGILPDIASGLSISIATAGSLVSAFAISF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCEEEEHHHHHHHHHHHHHH
AVGTPITMSLTSHLPKRKLMLGLTILFTVLNLLSSLAPMYEWLLVLRMLTAVVTGVLISL
HHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLVASESVPPAKRGVAVSFIFGGFTMANVFGVPIGTFIGQQAGWESTFWLTTLLGAVAW
HHHHHCCCCCCHHHCEEEEEHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHH
IAIYRVLPNQLSQEKASLREQMALLTNPRILIAFLIPAFGFGATYVVYTYLVPILKDVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
VPVAWVSPILFAYGFISIFSNIAAGKIASHNPIGRLRFVFLVQAFVLAALFVTTSNVTLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLNIALMSFMAILLTTSTQIYLIDLAEKFNPNAKGLASSLMPVASNVGIGLGSALGGVVY
HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ATSPIMTLALVGGLVALVTAGLTAVSYSLDQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTSSLSRSDWTLVLSLSLLTFVLGTSEFVIVGILPDIASGLSISIATAGSLVSAFAISF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCEEEEHHHHHHHHHHHHHH
AVGTPITMSLTSHLPKRKLMLGLTILFTVLNLLSSLAPMYEWLLVLRMLTAVVTGVLISL
HHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLVASESVPPAKRGVAVSFIFGGFTMANVFGVPIGTFIGQQAGWESTFWLTTLLGAVAW
HHHHHCCCCCCHHHCEEEEEHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHH
IAIYRVLPNQLSQEKASLREQMALLTNPRILIAFLIPAFGFGATYVVYTYLVPILKDVLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
VPVAWVSPILFAYGFISIFSNIAAGKIASHNPIGRLRFVFLVQAFVLAALFVTTSNVTLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLNIALMSFMAILLTTSTQIYLIDLAEKFNPNAKGLASSLMPVASNVGIGLGSALGGVVY
HHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ATSPIMTLALVGGLVALVTAGLTAVSYSLDQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]