Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is 229917694
Identifier: 229917694
GI number: 229917694
Start: 1928918
End: 1929712
Strand: Reverse
Name: 229917694
Synonym: EAT1b_1971
Alternate gene names: NA
Gene position: 1929712-1928918 (Counterclockwise)
Preceding gene: 229917695
Following gene: 229917693
Centisome position: 64.33
GC content: 49.18
Gene sequence:
>795_bases ATGAGGCTTCAAAAGTACGTAGCGCTCGCCGCCTCACAAATTAAAGTCGATATGGCTTATACGGCCTGGTACTGGGCAAG TATGTTCTCGGTGACGATGCGCCTGTTCATCTTATATTTCTTTTGGCAGGCTGTTTATGAGAATAAGACTGACGTGTCAG GCATCTCGCTCTCGATGATGTTGACGTATGCGGTGCTTGCGACGATGCTCGATCAATTCCGTGGCGGTGCCGGACGCGAA CTCGCGCATCTCATCAAACATGGCGGGGTCGCCGTCGAATTACTTCGACCGTATCATTTACTGGATAAATTACTCGCTCA AGACATCGGAACAAAAACATCGACCTTTTTCCGTTCGACGCTACCGCTTCTTGTCATCGCCATGCTGTTTATCGGCGTTG ACCCACCGACGTCAATTGAAAGTGCCTTCGCCTTCTCAATCAGTGTCGTGCTCGCGATCCTCCTTGCGACACTGATTGAT TTGCTCGTTGGGGTGTTGTCCTTTTATACGGTGAACGTGTGGGGACTTTCTGTCTTACAGGAGGCAATCATTACGATTAT GTCCGGGGCAATCATCCCGCTCACCTTATTCCCGGATTGGTTCCAGACAATCAGCTTGTATTTACCGTTCGCCTCACTCG TCTATGTGCCAGTTGCCATCTATACAGGTGGGATTGATGCATCTGCTATATGGTCGTCGATTTTGATTCAACTCGCATGG GTCGGTGCCTTCTTTATTTTTGTAAGACTTCTATTCGCGTATGCGGTTCGGAAAGTGACGGTGTTTGGCGGATGA
Upstream 100 bases:
>100_bases TCCGTGAAATCGTGAACTGCAATCGAGTGAAAGATTTATCCGTTGTCGTACCGAAAATGGAAACGTTGATTCGAAACTTG TATCAGCCTGAGGTGAGTGC
Downstream 100 bases:
>100_bases AACGATATGCGAAACTGTATTGGCTCTATGCCAAAAATCATTTCAAAGTGATGATGGAATATCGGATGGACTTCTTGATT GGTGTGTTATCGGTCTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: ABC-Type Transport System Permease Component; Daunorubicin Resistance Transmembrane Protein; Integral Membrane Protein; ABC Transporter Permease Protein; ABC Transporter Transmembrane Subunit; Transporter Permease Protein; ABC Transporter Permease-Like Protein; ABC-2 Type Transporter; Transmembrane Component Of ABC Transporter; Daunorubicin Resistance ABC Transporter Permease
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MRLQKYVALAASQIKVDMAYTAWYWASMFSVTMRLFILYFFWQAVYENKTDVSGISLSMMLTYAVLATMLDQFRGGAGRE LAHLIKHGGVAVELLRPYHLLDKLLAQDIGTKTSTFFRSTLPLLVIAMLFIGVDPPTSIESAFAFSISVVLAILLATLID LLVGVLSFYTVNVWGLSVLQEAIITIMSGAIIPLTLFPDWFQTISLYLPFASLVYVPVAIYTGGIDASAIWSSILIQLAW VGAFFIFVRLLFAYAVRKVTVFGG
Sequences:
>Translated_264_residues MRLQKYVALAASQIKVDMAYTAWYWASMFSVTMRLFILYFFWQAVYENKTDVSGISLSMMLTYAVLATMLDQFRGGAGRE LAHLIKHGGVAVELLRPYHLLDKLLAQDIGTKTSTFFRSTLPLLVIAMLFIGVDPPTSIESAFAFSISVVLAILLATLID LLVGVLSFYTVNVWGLSVLQEAIITIMSGAIIPLTLFPDWFQTISLYLPFASLVYVPVAIYTGGIDASAIWSSILIQLAW VGAFFIFVRLLFAYAVRKVTVFGG >Mature_264_residues MRLQKYVALAASQIKVDMAYTAWYWASMFSVTMRLFILYFFWQAVYENKTDVSGISLSMMLTYAVLATMLDQFRGGAGRE LAHLIKHGGVAVELLRPYHLLDKLLAQDIGTKTSTFFRSTLPLLVIAMLFIGVDPPTSIESAFAFSISVVLAILLATLID LLVGVLSFYTVNVWGLSVLQEAIITIMSGAIIPLTLFPDWFQTISLYLPFASLVYVPVAIYTGGIDASAIWSSILIQLAW VGAFFIFVRLLFAYAVRKVTVFGG
Specific function: Unknown
COG id: COG4587
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29271; Mature: 29271
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLQKYVALAASQIKVDMAYTAWYWASMFSVTMRLFILYFFWQAVYENKTDVSGISLSMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH LTYAVLATMLDQFRGGAGRELAHLIKHGGVAVELLRPYHLLDKLLAQDIGTKTSTFFRST HHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH LPLLVIAMLFIGVDPPTSIESAFAFSISVVLAILLATLIDLLVGVLSFYTVNVWGLSVLQ HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAIITIMSGAIIPLTLFPDWFQTISLYLPFASLVYVPVAIYTGGIDASAIWSSILIQLAW HHHHHHHCCCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VGAFFIFVRLLFAYAVRKVTVFGG HHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLQKYVALAASQIKVDMAYTAWYWASMFSVTMRLFILYFFWQAVYENKTDVSGISLSMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH LTYAVLATMLDQFRGGAGRELAHLIKHGGVAVELLRPYHLLDKLLAQDIGTKTSTFFRST HHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH LPLLVIAMLFIGVDPPTSIESAFAFSISVVLAILLATLIDLLVGVLSFYTVNVWGLSVLQ HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAIITIMSGAIIPLTLFPDWFQTISLYLPFASLVYVPVAIYTGGIDASAIWSSILIQLAW HHHHHHHCCCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VGAFFIFVRLLFAYAVRKVTVFGG HHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA