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The map label for this gene is araC [H]

Identifier: 229917663

GI number: 229917663

Start: 1900887

End: 1901666

Strand: Reverse

Name: araC [H]

Synonym: EAT1b_1940

Alternate gene names: 229917663

Gene position: 1901666-1900887 (Counterclockwise)

Preceding gene: 229917666

Following gene: 229917662

Centisome position: 63.39

GC content: 46.41

Gene sequence:

>780_bases
ATGGAAATCGGCTTTTGTGGCTATTCATACCATACAACGACTTATACTTTTCCATTTGCTAATCGACTTGATACGTATCT
GATTCGCTTACAAACGGCAGGAACGGCTCGGATTGTGGTCAATGGGGAAACGATGATCACACGACCTGGTGACGTATTGA
TTGTTCGTCCGGGTGACTTCTATGAAATGCATGTCGATACACCCGCGAGCGGAGACTATCATATCTTCTGTACCGGGCAT
TCAATCGATACATGGTGGCATGCGACTCCACGGGGGCGATTGAATACCATCGCCATCGATTCACGCCTTCTTTCGCTATG
GCAACACATTACGGAAGAAGTGCGCCGTCCACCGTCTGAACAAAGTGCCGTTTTAATTGAAACACTCGTTCAAGCACTCC
TACTCATGCTCGATCGTTCGATTCAAGATGTGCATTCCCAGGCGCGACCTCCAGTCGTCTCTCGTATGATGCGCTTTATC
GAAGCACACGTCACGAGTGACTTCAAAGTTTCAGACGTCGCCGACGCCGTCGGACTCAGCGTTTCACGGACCGTTCATCT
CTTTAAAGAAGGGACCGGGATGACAATCATCGAATATGCACAATCGATTCGCTTACAGCTTGCCGAAGAGCAAATGCGCT
ATACAAAACATTCGTTAGAAACGATAGCGGAACTGTCTGGATTTCGAAGTTATCCATATTTCCACAGAATTTTTAAACGA
AAATATGGCGTAGCACCAGGGGTTTATCGCACTCTTCAACAAAAAAACGAAAAAAAATAA

Upstream 100 bases:

>100_bases
TTCCGTTTCAACGCTTTCATCGTACTGCCTCCAAGGAATCATGACCATCCATGATATGATTAAGATATGTACAATCTTGC
TATTAAAAGAGGAGATTATT

Downstream 100 bases:

>100_bases
AAAAAGAGTGATCCATTTTTTGAACCGCTCCGTTAGATGGGTGTAAATAACGACAACACTCACTTACGAAAAGGAGCGAT
TACCCATGAAGAAGAAGAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MEIGFCGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDFYEMHVDTPASGDYHIFCTGH
SIDTWWHATPRGRLNTIAIDSRLLSLWQHITEEVRRPPSEQSAVLIETLVQALLLMLDRSIQDVHSQARPPVVSRMMRFI
EAHVTSDFKVSDVADAVGLSVSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHRIFKR
KYGVAPGVYRTLQQKNEKK

Sequences:

>Translated_259_residues
MEIGFCGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDFYEMHVDTPASGDYHIFCTGH
SIDTWWHATPRGRLNTIAIDSRLLSLWQHITEEVRRPPSEQSAVLIETLVQALLLMLDRSIQDVHSQARPPVVSRMMRFI
EAHVTSDFKVSDVADAVGLSVSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHRIFKR
KYGVAPGVYRTLQQKNEKK
>Mature_259_residues
MEIGFCGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDFYEMHVDTPASGDYHIFCTGH
SIDTWWHATPRGRLNTIAIDSRLLSLWQHITEEVRRPPSEQSAVLIETLVQALLLMLDRSIQDVHSQARPPVVSRMMRFI
EAHVTSDFKVSDVADAVGLSVSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHRIFKR
KYGVAPGVYRTLQQKNEKK

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=241, Percent_Identity=25.3112033195021, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789993, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29658; Mature: 29658

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGFCGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDF
CCEEEEEEEECCEEEEECCHHHHEEEEEEEECCCEEEEEEECCEEEECCCCEEEECCCCE
YEMHVDTPASGDYHIFCTGHSIDTWWHATPRGRLNTIAIDSRLLSLWQHITEEVRRPPSE
EEEEECCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
QSAVLIETLVQALLLMLDRSIQDVHSQARPPVVSRMMRFIEAHVTSDFKVSDVADAVGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCH
VSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHRIFKR
HHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KYGVAPGVYRTLQQKNEKK
HCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIGFCGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDF
CCEEEEEEEECCEEEEECCHHHHEEEEEEEECCCEEEEEEECCEEEECCCCEEEECCCCE
YEMHVDTPASGDYHIFCTGHSIDTWWHATPRGRLNTIAIDSRLLSLWQHITEEVRRPPSE
EEEEECCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
QSAVLIETLVQALLLMLDRSIQDVHSQARPPVVSRMMRFIEAHVTSDFKVSDVADAVGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCH
VSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHRIFKR
HHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KYGVAPGVYRTLQQKNEKK
HCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3902795 [H]