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The map label for this gene is yibP [H]

Identifier: 229597227

GI number: 229597227

Start: 4573864

End: 4575234

Strand: Direct

Name: yibP [H]

Synonym: YPK_4142

Alternate gene names: 229597227

Gene position: 4573864-4575234 (Clockwise)

Preceding gene: 170026348

Following gene: 170026350

Centisome position: 97.54

GC content: 50.26

Gene sequence:

>1371_bases
ATGAAGGATAGAGAGTTATTGGCGAAATCAATAACTACGAAAGATGCCGTCTCTGACGGTAGAGAGTCTCCCTCTCTGCT
GTCAGATAAGTTGAGTCGTCTACCGTGGTCAACACTCTATGCCAGCGTTTTTTGTGCTGGCGTACTGTTATTGCCATTTT
CTGGTCAGGCTGTCGAACCCCCTGTCGCGGCCAAAGCATCAGAGAATAAAAACCAACTCAAAACCCTCCAACAGGATATC
GCTGAAAAAGAAAAAAGTGTTCAGCAACAAAAAAAACAACGCAGTTCATTGCTGGATCAACTAAAACAGCAAGAAAACAC
AATTTCTCAGACCAGCCGCAGCCTGCGCGAGACCCAAGCGACCCTGGCTGAACTGAGTAAAGATGTTGCCAGCCTCACGA
CCACGATTGAAAAACTGCAAAATCAGCAGTCGCAACAGCAAAGTATTCTGTCTAAACAACTTGCAGCGGCGTTTAAACAA
GGCAAACACAGTAGCTTACAACTTATTTTAAGTGGCGAAGAGAGCCAGCGCAGTGAGCGTATTCTGGCTTATTTCAGTTA
CCTGAATGAAGCTCGGCAAAAAGCCATTGAAGAGTTGAAGCAGACACGTACCACGCTGTCTGCAGAGAAAAAAACGCTGG
AGCAAAAACAGAATCAACACAAGGCATTGCTGGATGAACAGAAAGCGCAACAACAGAAGCTGGAACAAGCGCGTATTGCC
CGCCAAAAAACCCTGACATCGCTGGAAGCCTCGCTGGAGAAAGATCAGCAGAGTTTGGCGGAGTTAAAGTTGAACGAAAG
CCGTTTACGTGACCAAATCGCCAAAGCAGAACGGGAAGCCAAAGCTCGGGCTGAACGGGAGGCCAAAGAAGCGGCCCGTG
TGCGTGAACAGGTAAAAGTCAAAGAGCAGCAAGCGAAGAAGACCGGTAGCAGTTATAAACCAAGTGAAAGTGAGCGCTCA
TTGATGGCGCGCACCGGCGGCTTGGGCCGTCCTGGCGGTCAAGCCCTATGGCCCGTTCGTGGTAACGTGTCCCACCGTTT
CGGTGAACCCCTACAAGGTGAACTACGCTGGAAAGGGATGGTTATCACCGCACCTGAAGGCAGCGAAGTCAAAGCCATCG
CCGATGGCCGTGTTTTACTGGCTGACTGGTTACAAGGTTATGGCTTGGTGGTCGTTATCGAGCATGGGAAAGGGGATATG
AGTTTGTATGGCTACAACCAAAGTGCCTTGGTCAATGTTGGCGCTCAGGTTAAAGCGGGCCAGCCTATCGCACTTGTGGG
TACCAGCGGTGGGCAGGGCGAGCCATCGCTCTATTTCGAAATCCGCCGTCAGGGACAAGCCGTTAACCCACAGCCCTGGT
TAGGAAGATAG

Upstream 100 bases:

>100_bases
GCTTTCTGATATCGCACCAACCATGTTGTCACTGATGGAAATGGAAATCCCACAAGAGATGACTGGTAAGCCGCTGTTCA
TCGTGGAATAATCCTTCGTT

Downstream 100 bases:

>100_bases
GGAACAACGTTAGGGAACTCGTATTGCGCTACTTCAACACACGCCAATTTATCATCGTAAGCACGCTATTCATCGCCAGC
ACAGCACAGGCCGGCAAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVFCAGVLLLPFSGQAVEPPVAAKASENKNQLKTLQQDI
AEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQATLAELSKDVASLTTTIEKLQNQQSQQQSILSKQLAAAFKQ
GKHSSLQLILSGEESQRSERILAYFSYLNEARQKAIEELKQTRTTLSAEKKTLEQKQNQHKALLDEQKAQQQKLEQARIA
RQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKAEREAKARAEREAKEAARVREQVKVKEQQAKKTGSSYKPSESERS
LMARTGGLGRPGGQALWPVRGNVSHRFGEPLQGELRWKGMVITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDM
SLYGYNQSALVNVGAQVKAGQPIALVGTSGGQGEPSLYFEIRRQGQAVNPQPWLGR

Sequences:

>Translated_456_residues
MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVFCAGVLLLPFSGQAVEPPVAAKASENKNQLKTLQQDI
AEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQATLAELSKDVASLTTTIEKLQNQQSQQQSILSKQLAAAFKQ
GKHSSLQLILSGEESQRSERILAYFSYLNEARQKAIEELKQTRTTLSAEKKTLEQKQNQHKALLDEQKAQQQKLEQARIA
RQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKAEREAKARAEREAKEAARVREQVKVKEQQAKKTGSSYKPSESERS
LMARTGGLGRPGGQALWPVRGNVSHRFGEPLQGELRWKGMVITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDM
SLYGYNQSALVNVGAQVKAGQPIALVGTSGGQGEPSLYFEIRRQGQAVNPQPWLGR
>Mature_456_residues
MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVFCAGVLLLPFSGQAVEPPVAAKASENKNQLKTLQQDI
AEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQATLAELSKDVASLTTTIEKLQNQQSQQQSILSKQLAAAFKQ
GKHSSLQLILSGEESQRSERILAYFSYLNEARQKAIEELKQTRTTLSAEKKTLEQKQNQHKALLDEQKAQQQKLEQARIA
RQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKAEREAKARAEREAKEAARVREQVKVKEQQAKKTGSSYKPSESERS
LMARTGGLGRPGGQALWPVRGNVSHRFGEPLQGELRWKGMVITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDM
SLYGYNQSALVNVGAQVKAGQPIALVGTSGGQGEPSLYFEIRRQGQAVNPQPWLGR

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0756 [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=418, Percent_Identity=62.9186602870813, Blast_Score=496, Evalue=1e-141,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=40.3361344537815, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082174, Length=120, Percent_Identity=35, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081989, Length=163, Percent_Identity=28.8343558282209, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 50519; Mature: 50519

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVFCAGVLLLPFSGQAVEP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PVAAKASENKNQLKTLQQDIAEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAELSKDVASLTTTIEKLQNQQSQQQSILSKQLAAAFKQGKHSSLQLILSGEESQRSER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
ILAYFSYLNEARQKAIEELKQTRTTLSAEKKTLEQKQNQHKALLDEQKAQQQKLEQARIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKAEREAKARAEREAKEAARVREQVKV
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEQQAKKTGSSYKPSESERSLMARTGGLGRPGGQALWPVRGNVSHRFGEPLQGELRWKGM
HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHCCCCCCCCEEECEE
VITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDMSLYGYNQSALVNVGAQVKAG
EEECCCCCCEEEECCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCHHHEECCCEEECC
QPIALVGTSGGQGEPSLYFEIRRQGQAVNPQPWLGR
CCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVFCAGVLLLPFSGQAVEP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PVAAKASENKNQLKTLQQDIAEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAELSKDVASLTTTIEKLQNQQSQQQSILSKQLAAAFKQGKHSSLQLILSGEESQRSER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
ILAYFSYLNEARQKAIEELKQTRTTLSAEKKTLEQKQNQHKALLDEQKAQQQKLEQARIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKAEREAKARAEREAKEAARVREQVKV
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEQQAKKTGSSYKPSESERSLMARTGGLGRPGGQALWPVRGNVSHRFGEPLQGELRWKGM
HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHCCCCCCCCEEECEE
VITAPEGSEVKAIADGRVLLADWLQGYGLVVVIEHGKGDMSLYGYNQSALVNVGAQVKAG
EEECCCCCCEEEECCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCHHHEECCCEEECC
QPIALVGTSGGQGEPSLYFEIRRQGQAVNPQPWLGR
CCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]