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The map label for this gene is ydcM [C]

Identifier: 227826868

GI number: 227826868

Start: 432869

End: 434248

Strand: Direct

Name: ydcM [C]

Synonym: M1425_0495

Alternate gene names: 227826868

Gene position: 432869-434248 (Clockwise)

Preceding gene: 227826867

Following gene: 227826869

Centisome position: 16.59

GC content: 42.1

Gene sequence:

>1380_bases
ATGAAAAGAACTAACGTAGTTAAACTCATCGTAGACAAGAATACCCACGAGAAGCTTAAGGAACTGACTATAGCAACAGC
CAAATGTTGGAATGAAGTGAACTGGTTAAGAATGCAACAGTATAAGAAAGGGGAGAGAATAGACTTCGCTAAAACAGAAA
AAGAGGTATACGAGAAGTACAAACAAGTGCTAAAAGTTAATGCACAACAAGTTGCTAGAAAGAACGCCGAGGACTGGAGA
AGCTTCTTCTCCCTAATCGAAGAGAAGAAGGAGGGGAAATTACCAAAGTGGTTCAAACCTAGACCTCCAAGCTATTGGAA
AGATGAAAGTGGAAAATATAAGCTAATAATACTCGTTAGGAACGACCGTTATGAGGTTGATGAGAACAAGAGGATTATTT
ATTTGAAAGACTTTAAGCTAGCCTTAAAGTTTAATGGAAAAATTAAGTGGCATGGGAAACAGGGTAGACTAGAGGTAATT
TACGATGAGGTTAGGAGGAGCTGGTATGCTCATATACCAATAGAGGTCGAGAACAACGTGAAAGCAAAAGGTAATTTAAG
GGCTTCTGTGGATTTAGGAATTGTTAATTTAGCTACAATTTACGTTGAGGACAGAACATGGTATATTTTCAAGGGTGGTA
GTGTCCTCTCTCAATACGAGTATTATGGTAAGAGGATAGGTGAGGTTCAGAAAGTTTTAGCAAGGCATGGGCAAAGGAGA
AGTATGAAGCTTAAATTGCTTTATGATAAGAGGAGGAGGTTCTTGAAACATGCATTAAACAGTATGGTTAGGAAGATTAT
GGAGGAGTTAGGAGAAAAGGGGGTAAGCGAGGTTATTATAGGTTATCCTAAAGGGATTAATAAAAATCACGGCAATAAAC
TCACTGTAAACTTCTGGAACTACAGTTACGTTATTAAGCGTTTTGAGGAGGTTGGAGAGGAATTGGGGATTAAGATAATG
AAAGTAGAAGAATCCTATACTTCTAAGACTTGCTCCCTATGCGGGGAAACCCATGAGGGTGGGCGTGTTAAACGTGGTTT
GTTTAAGTGTCCCCGCATGGGGAAAGTTATGAATGCTGATTTGAACGGTGCGATAAATATTCTACATATCCCCGAGTCCC
AAGGAACCATGGGCAGAGGGCTACCCATGGTGAGGGATAGGGGTAATGGGCTGAAGTTCCAGCCCGTGGTCTACCGCTGG
ACGAGTGAAGCGGGGTGGGTAATTCCCACCAGCTATGAAGTGATGAGGATGAAGGCGGTAAACCACAAACCCATGATTCG
CCCTGAGGGAACCCTCGCCCTTCAGGCGGGGAGGTGGTCAGAGTCCTCTTGTTTGGCTTCGAACCCTTTTTGGAATACAA
GGAAAATCCATCTCAGTTAA

Upstream 100 bases:

>100_bases
GGAGGAAAACTCTGGACTAGAAGCTACTTTGTATCAACAGCTGGTAACGTATCGAGTGAAACCATAAAGAAATACATTGA
GGAACAGTGGGGGAAAGAAA

Downstream 100 bases:

>100_bases
TTGTTGAAGCCTTAAATGGAAGTACCATATTAAAGGAAGAGGTCAAAGGTGTGATATTGCCAGTTGAGTATGAGAAGATA
GAGGATTTAATAGTTACGAA

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Neutral Protease; Transposase And Inactivated Derivatives; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; Transposase Family Protein; Transposase OrfB; Transposase IS; Transposase ORF_B; Transposase Family; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MKRTNVVKLIVDKNTHEKLKELTIATAKCWNEVNWLRMQQYKKGERIDFAKTEKEVYEKYKQVLKVNAQQVARKNAEDWR
SFFSLIEEKKEGKLPKWFKPRPPSYWKDESGKYKLIILVRNDRYEVDENKRIIYLKDFKLALKFNGKIKWHGKQGRLEVI
YDEVRRSWYAHIPIEVENNVKAKGNLRASVDLGIVNLATIYVEDRTWYIFKGGSVLSQYEYYGKRIGEVQKVLARHGQRR
SMKLKLLYDKRRRFLKHALNSMVRKIMEELGEKGVSEVIIGYPKGINKNHGNKLTVNFWNYSYVIKRFEEVGEELGIKIM
KVEESYTSKTCSLCGETHEGGRVKRGLFKCPRMGKVMNADLNGAINILHIPESQGTMGRGLPMVRDRGNGLKFQPVVYRW
TSEAGWVIPTSYEVMRMKAVNHKPMIRPEGTLALQAGRWSESSCLASNPFWNTRKIHLS

Sequences:

>Translated_459_residues
MKRTNVVKLIVDKNTHEKLKELTIATAKCWNEVNWLRMQQYKKGERIDFAKTEKEVYEKYKQVLKVNAQQVARKNAEDWR
SFFSLIEEKKEGKLPKWFKPRPPSYWKDESGKYKLIILVRNDRYEVDENKRIIYLKDFKLALKFNGKIKWHGKQGRLEVI
YDEVRRSWYAHIPIEVENNVKAKGNLRASVDLGIVNLATIYVEDRTWYIFKGGSVLSQYEYYGKRIGEVQKVLARHGQRR
SMKLKLLYDKRRRFLKHALNSMVRKIMEELGEKGVSEVIIGYPKGINKNHGNKLTVNFWNYSYVIKRFEEVGEELGIKIM
KVEESYTSKTCSLCGETHEGGRVKRGLFKCPRMGKVMNADLNGAINILHIPESQGTMGRGLPMVRDRGNGLKFQPVVYRW
TSEAGWVIPTSYEVMRMKAVNHKPMIRPEGTLALQAGRWSESSCLASNPFWNTRKIHLS
>Mature_459_residues
MKRTNVVKLIVDKNTHEKLKELTIATAKCWNEVNWLRMQQYKKGERIDFAKTEKEVYEKYKQVLKVNAQQVARKNAEDWR
SFFSLIEEKKEGKLPKWFKPRPPSYWKDESGKYKLIILVRNDRYEVDENKRIIYLKDFKLALKFNGKIKWHGKQGRLEVI
YDEVRRSWYAHIPIEVENNVKAKGNLRASVDLGIVNLATIYVEDRTWYIFKGGSVLSQYEYYGKRIGEVQKVLARHGQRR
SMKLKLLYDKRRRFLKHALNSMVRKIMEELGEKGVSEVIIGYPKGINKNHGNKLTVNFWNYSYVIKRFEEVGEELGIKIM
KVEESYTSKTCSLCGETHEGGRVKRGLFKCPRMGKVMNADLNGAINILHIPESQGTMGRGLPMVRDRGNGLKFQPVVYRW
TSEAGWVIPTSYEVMRMKAVNHKPMIRPEGTLALQAGRWSESSCLASNPFWNTRKIHLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53677; Mature: 53677

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTNVVKLIVDKNTHEKLKELTIATAKCWNEVNWLRMQQYKKGERIDFAKTEKEVYEKY
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KQVLKVNAQQVARKNAEDWRSFFSLIEEKKEGKLPKWFKPRPPSYWKDESGKYKLIILVR
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
NDRYEVDENKRIIYLKDFKLALKFNGKIKWHGKQGRLEVIYDEVRRSWYAHIPIEVENNV
CCCEEECCCCEEEEEEEEEEEEEECCEEEECCCCCCCHHHHHHHHHCEEEEEEEEECCCC
KAKGNLRASVDLGIVNLATIYVEDRTWYIFKGGSVLSQYEYYGKRIGEVQKVLARHGQRR
EECCCEEEEEEECEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
SMKLKLLYDKRRRFLKHALNSMVRKIMEELGEKGVSEVIIGYPKGINKNHGNKLTVNFWN
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCEEEEEEEC
YSYVIKRFEEVGEELGIKIMKVEESYTSKTCSLCGETHEGGRVKRGLFKCPRMGKVMNAD
HHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEECCC
LNGAINILHIPESQGTMGRGLPMVRDRGNGLKFQPVVYRWTSEAGWVIPTSYEVMRMKAV
CCCCEEEEECCCCCCCCCCCCCCEEECCCCEEECEEEEEEECCCCEEECCCHHHHEEECC
NHKPMIRPEGTLALQAGRWSESSCLASNPFWNTRKIHLS
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKRTNVVKLIVDKNTHEKLKELTIATAKCWNEVNWLRMQQYKKGERIDFAKTEKEVYEKY
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KQVLKVNAQQVARKNAEDWRSFFSLIEEKKEGKLPKWFKPRPPSYWKDESGKYKLIILVR
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
NDRYEVDENKRIIYLKDFKLALKFNGKIKWHGKQGRLEVIYDEVRRSWYAHIPIEVENNV
CCCEEECCCCEEEEEEEEEEEEEECCEEEECCCCCCCHHHHHHHHHCEEEEEEEEECCCC
KAKGNLRASVDLGIVNLATIYVEDRTWYIFKGGSVLSQYEYYGKRIGEVQKVLARHGQRR
EECCCEEEEEEECEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
SMKLKLLYDKRRRFLKHALNSMVRKIMEELGEKGVSEVIIGYPKGINKNHGNKLTVNFWN
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCEEEEEEEC
YSYVIKRFEEVGEELGIKIMKVEESYTSKTCSLCGETHEGGRVKRGLFKCPRMGKVMNAD
HHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEECCC
LNGAINILHIPESQGTMGRGLPMVRDRGNGLKFQPVVYRWTSEAGWVIPTSYEVMRMKAV
CCCCEEEEECCCCCCCCCCCCCCEEECCCCEEECEEEEEEECCCCEEECCCHHHHEEECC
NHKPMIRPEGTLALQAGRWSESSCLASNPFWNTRKIHLS
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA