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The map label for this gene is yebA [H]

Identifier: 227080811

GI number: 227080811

Start: 628047

End: 629348

Strand: Reverse

Name: yebA [H]

Synonym: VCM66_0588

Alternate gene names: 227080811

Gene position: 629348-628047 (Counterclockwise)

Preceding gene: 227080813

Following gene: 227080807

Centisome position: 21.76

GC content: 45.62

Gene sequence:

>1302_bases
ATGCTTTCTCTTTTCAATCGTCTTCCTTGGCTGCATCGAGTGTTAATCACCGCGTTTAGCGCCATTATTGTCTTCGCCAT
TTTTTTTCTGCCCAATTCTGAAGATTTACGTAAACCGGATGCTCAGCGAGAAGTAGGACGCCACTATCCCGTCACTCTCG
ATAACCAACTGGTCTCCACACCAGAGGAAGAAGTGATCGCTCCGCCCTCTGTTATGCTGCGCTGGGAAACCTACCAAGTT
GCCAACGGTGAGAGTGCCGCCTTACTCTTCCAGCGAGCAGGACTCTCATCACGCGTGCTCTACGAATTGACCTCAAGCAA
TAGCGATATCAACAATCAACTGTCGAAGTTAATGCCTAAAGACGAGCTGAAATTTGGCTTTGACAAAGATAATCAATTAG
TTCAATTAAAACGCACCATTAGCCCTTATGAAACCTTTGTGGTAACCCGTTCAGATTCTGGTTTTACCTCTGAGTTTGAT
AAGAAAGAAGTCACCTTCCAACTCAATTATGCCGAAGCCAAAATCACCTCTAATTTCTGGAATGCGGGTGTCACCGCAGG
GTTAAGTGCTAACCAGATCATTGAGTTAGCCAATATGTTTGGCTGGGATATCGACTTCGCGCTCGATATTCGCGAAGGCG
ATCAATTCAAATTGCTCTACCAAGAAAAAATCGTCGAAGGCTCTGTGATTGGTCGCGGTAATATTATTGCTGCCACTTTT
ATCAACCAAGGTTCAACCTTTACTGCGATTTTGGATGACAATACAGGTAACTATTACGATCAGAATGGCCGTGCGATGAA
AAAGGCCTTCTTGCGTTCGCCGCTCGATTTTCGTCGCGTCTCTTCTAACTTTAATCCTCGCCGACTCCATCCAGTGACCG
GGCAAATTAAAGCTCACCGTGGTACTGACTATGTGGCACCAGTAGGAACACCGATTTGGGCTGCGGGTGATGGTGTGGTT
GAGAAATCCAGCTATAACCAATTTAATGGTAACTATGTCTACATTCGCCATAGCAATACCTACATTACCAAGTACCTACA
TTTACAGCGCCGCCTAGTTAAAACCGGAGAGCGAGTAAAACAAGGCCAGACTATTGGTACATTGGGGGGCACAGGACGAG
TTACCGGCCCTCACTTACACTATGAATTCTTGGTTAATGGCATCCACAAAAACCCACGCACGGTTGAATTACCACAAGCA
CAGTCACTGACTGGTAAAGCAAAAGAGACCTTTATTGCGAATGCGAAGCAACGAATGGAAAAGCTTGAGCGTTACAGCCA
GTTACTGTATGCCAATCAATAA

Upstream 100 bases:

>100_bases
TATGATAGTGGGACATATTACTTGAATAGCGATGCATTTTGAAACCAGTTAGACTACCCGACAGCGATTTTGTTAATAAT
TAAATGAATTTGAACTGAAC

Downstream 100 bases:

>100_bases
TCATCTCGTGGCGGACAAAAAGTTAGGCCAGCAATTGCTGGCCTAACTTTTATCAACATTCACTCTGTCGCTATGACATA
TTTAACTCTGCGCATCTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLSLFNRLPWLHRVLITAFSAIIVFAIFFLPNSEDLRKPDAQREVGRHYPVTLDNQLVSTPEEEVIAPPSVMLRWETYQV
ANGESAALLFQRAGLSSRVLYELTSSNSDINNQLSKLMPKDELKFGFDKDNQLVQLKRTISPYETFVVTRSDSGFTSEFD
KKEVTFQLNYAEAKITSNFWNAGVTAGLSANQIIELANMFGWDIDFALDIREGDQFKLLYQEKIVEGSVIGRGNIIAATF
INQGSTFTAILDDNTGNYYDQNGRAMKKAFLRSPLDFRRVSSNFNPRRLHPVTGQIKAHRGTDYVAPVGTPIWAAGDGVV
EKSSYNQFNGNYVYIRHSNTYITKYLHLQRRLVKTGERVKQGQTIGTLGGTGRVTGPHLHYEFLVNGIHKNPRTVELPQA
QSLTGKAKETFIANAKQRMEKLERYSQLLYANQ

Sequences:

>Translated_433_residues
MLSLFNRLPWLHRVLITAFSAIIVFAIFFLPNSEDLRKPDAQREVGRHYPVTLDNQLVSTPEEEVIAPPSVMLRWETYQV
ANGESAALLFQRAGLSSRVLYELTSSNSDINNQLSKLMPKDELKFGFDKDNQLVQLKRTISPYETFVVTRSDSGFTSEFD
KKEVTFQLNYAEAKITSNFWNAGVTAGLSANQIIELANMFGWDIDFALDIREGDQFKLLYQEKIVEGSVIGRGNIIAATF
INQGSTFTAILDDNTGNYYDQNGRAMKKAFLRSPLDFRRVSSNFNPRRLHPVTGQIKAHRGTDYVAPVGTPIWAAGDGVV
EKSSYNQFNGNYVYIRHSNTYITKYLHLQRRLVKTGERVKQGQTIGTLGGTGRVTGPHLHYEFLVNGIHKNPRTVELPQA
QSLTGKAKETFIANAKQRMEKLERYSQLLYANQ
>Mature_433_residues
MLSLFNRLPWLHRVLITAFSAIIVFAIFFLPNSEDLRKPDAQREVGRHYPVTLDNQLVSTPEEEVIAPPSVMLRWETYQV
ANGESAALLFQRAGLSSRVLYELTSSNSDINNQLSKLMPKDELKFGFDKDNQLVQLKRTISPYETFVVTRSDSGFTSEFD
KKEVTFQLNYAEAKITSNFWNAGVTAGLSANQIIELANMFGWDIDFALDIREGDQFKLLYQEKIVEGSVIGRGNIIAATF
INQGSTFTAILDDNTGNYYDQNGRAMKKAFLRSPLDFRRVSSNFNPRRLHPVTGQIKAHRGTDYVAPVGTPIWAAGDGVV
EKSSYNQFNGNYVYIRHSNTYITKYLHLQRRLVKTGERVKQGQTIGTLGGTGRVTGPHLHYEFLVNGIHKNPRTVELPQA
QSLTGKAKETFIANAKQRMEKLERYSQLLYANQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=438, Percent_Identity=28.7671232876712, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI87082174, Length=122, Percent_Identity=36.0655737704918, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48979; Mature: 48979

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLFNRLPWLHRVLITAFSAIIVFAIFFLPNSEDLRKPDAQREVGRHYPVTLDNQLVST
CCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHCCCCCEEECCHHHCC
PEEEVIAPPSVMLRWETYQVANGESAALLFQRAGLSSRVLYELTSSNSDINNQLSKLMPK
CHHHHCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCH
DELKFGFDKDNQLVQLKRTISPYETFVVTRSDSGFTSEFDKKEVTFQLNYAEAKITSNFW
HHCCCCCCCCCCEEEEHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEHHEEEECCCC
NAGVTAGLSANQIIELANMFGWDIDFALDIREGDQFKLLYQEKIVEGSVIGRGNIIAATF
CCCEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHCCCEECCCCEEEEEE
INQGSTFTAILDDNTGNYYDQNGRAMKKAFLRSPLDFRRVSSNFNPRRLHPVTGQIKAHR
ECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEECCCCCEEEECC
GTDYVAPVGTPIWAAGDGVVEKSSYNQFNGNYVYIRHSNTYITKYLHLQRRLVKTGERVK
CCCEECCCCCCEEECCCCCEECCCCCCCCCCEEEEEECCCEEHHHHHHHHHHHHHHHHHH
QGQTIGTLGGTGRVTGPHLHYEFLVNGIHKNPRTVELPQAQSLTGKAKETFIANAKQRME
CCCEEEECCCCCCCCCCCEEHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
KLERYSQLLYANQ
HHHHHHHHHHCCC
>Mature Secondary Structure
MLSLFNRLPWLHRVLITAFSAIIVFAIFFLPNSEDLRKPDAQREVGRHYPVTLDNQLVST
CCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHCCCCCEEECCHHHCC
PEEEVIAPPSVMLRWETYQVANGESAALLFQRAGLSSRVLYELTSSNSDINNQLSKLMPK
CHHHHCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCH
DELKFGFDKDNQLVQLKRTISPYETFVVTRSDSGFTSEFDKKEVTFQLNYAEAKITSNFW
HHCCCCCCCCCCEEEEHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEHHEEEECCCC
NAGVTAGLSANQIIELANMFGWDIDFALDIREGDQFKLLYQEKIVEGSVIGRGNIIAATF
CCCEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHCCCEECCCCEEEEEE
INQGSTFTAILDDNTGNYYDQNGRAMKKAFLRSPLDFRRVSSNFNPRRLHPVTGQIKAHR
ECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEECCCCCEEEECC
GTDYVAPVGTPIWAAGDGVVEKSSYNQFNGNYVYIRHSNTYITKYLHLQRRLVKTGERVK
CCCEECCCCCCEEECCCCCEECCCCCCCCCCEEEEEECCCEEHHHHHHHHHHHHHHHHHH
QGQTIGTLGGTGRVTGPHLHYEFLVNGIHKNPRTVELPQAQSLTGKAKETFIANAKQRME
CCCEEEECCCCCCCCCCCEEHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
KLERYSQLLYANQ
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]