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The map label for this gene is 227080604

Identifier: 227080604

GI number: 227080604

Start: 400533

End: 402326

Strand: Reverse

Name: 227080604

Synonym: VCM66_0378

Alternate gene names: NA

Gene position: 402326-400533 (Counterclockwise)

Preceding gene: 227080605

Following gene: 227080602

Centisome position: 13.91

GC content: 48.27

Gene sequence:

>1794_bases
GTGAACTGCATGGCAACTTTGCTGTTAAGTGGCACTCGGTTGGAACCTCACGCTCCGAACCTACCACTCAATAAACCGTT
TCTTTTTGCCTTGGCCGTGGTTTATCTGCTCGCCATGCATTTCTTTATGCCTAACCCCGGCGGTGCTGGACTGGCACTCT
CCTTCAATACTACGGTCTGGATCGCGACCAGCATAACACTGGCGATTGGTCTGTATCAGTTGGCGAATAATCAAGCGCTG
CGTTATTCCAAGCTGACCATTGGACTTTGGTTAAGCTGTGCTCTGCTAACCCTACCCATCACTTACTCGAATGCCGATTG
GTTTCATACTCTTGGCCGCTTAGTGGGTCTCTGGGCTGGATTTACTCTGTTTCTCGTCTTACAACAATTTCGCTTTAGCA
ACAAACATAAACAGCGTTTGCTGTGGTTTATTCTACTGGGTAGCGTCATTGAAGCCGTGATCGGTTTAATTCAATACTTT
TGGTTAGAGCCGGGTAACCCCTTTGGTTATGACACCGAAGCAAATCGACCGTATGGTATTTTCCAGCAGCCAAATGTGAT
GGCCAGTTTCCTCGCAACAGGGCTGGTGTTGTCAGGTTATTTGCTGGCCAGACAACCGGAAAAATATGACTCGCGCTGGA
GCAAAATCGGCATCCTTTACGCGACACCGCTACTCACGGCTCCCTTACTGGTCGTACTCGCCTCTCGCACTGGGTGGCTG
GCCAGTTTATTGAGTATCGCTCTGGTTGCCCCTTACTTATATCGATTCGCTTCACGTCGGCGCTTTACGCTCTGGCTTCT
TGCCATAACTCTTGGGATTTGTGCAGGTTTTACCGCTATGTATGGCCAAGGAACCTCTGGTTTTGTCGCGAATAAGGCTG
ACTTAGAAAGCCCACGTCGTTTCACATTTCCACAAACCATAGATATGATCATCGAAAAGCCTTTTACAGGCTATGGTTAT
GGCAAATTTGAGGCGCAGTATCTGCTTTATACTGCTCGCCAACATCAGTTAAATAGCAGCTATCCAGCAGGCTTAGCATC
GATGGATCACCCACACAATGAGCTGTTGTATTGGGGGGTAGAAGGCGGATTACTACCTGTAATGGGTATATTACTCGCCG
CCTGTTTTTGTGCTCTACGCATTTATGCCGCCAAACGTGGCACTCGCATGGCCATGCTGGCTCTGTTTGTGCCGATCACC
TTACACGCTCAATTGGAGTATCCGTTTTACCACTCCGCAATTCACTGGATCACCTTTATCATCCTAATCTACTGGGTAGA
TCAACGGGTCGCACGCTATCGACTGGCCAGTTTCACCACGCTCACCAAATCTTTATTGCGTATTACCAGCTTAGTGCTGC
CGATTGTCACCAGCTTGTATATGGTCACAGCGTTACACACCAACTATGTGTTAACGCAATTTGAAAAATCTCAGCCACTC
AATCCTGAATTGCTGAAAAACGTGACTAACCCATTGGTATGGCAAGACCGATTTGATTGGGATATCTACAGCACCTATCT
GAACATCGGGCTCCATGAACAAAAAGCGGAGCTTATCCAACCCTATATCGATTGGTCGTTACAGATCATTCAACATAAAC
CGCGCCCGGCCTTCTATTCAAACCTGATTTTGGCTTATCAAGGTTTAGGCGATACGAGCCGTGCGCAGCAAATCCGCCGC
GAGGCCGAATTTCTGTTCCCCAATCAAGATTTCAGTACAGTCCAGTACCACCCCTCGATAAAGGTCAACAGTGCCACATC
TGATGCTGAGGTTCCCTCAGCCGCGACACCCTAA

Upstream 100 bases:

>100_bases
GAAGCTTCACATACCGCACGTTTCCTCAAGCCTTTGTTGAATTAGAAAAAAAGGCTAAAGTAATGAAACCAGCGAACTGT
GCGCTGGTTTCTTTTTTAAG

Downstream 100 bases:

>100_bases
GCTCTGCGAGAAACAATAAGGGTGGCTTTTAAGCCACCCTTATTTCTCTTTCATACAGCTTTTCTCTTGCGTATGGTATT
AACGCAGCGACTCTTCGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Lipid A Core; O-Antigen Polymerase Family; Inner Membrane Protein

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPGGAGLALSFNTTVWIATSITLAIGLYQLANNQAL
RYSKLTIGLWLSCALLTLPITYSNADWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYF
WLEPGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYATPLLTAPLLVVLASRTGWL
ASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTAMYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGY
GKFEAQYLLYTARQHQLNSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAMLALFVPIT
LHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITSLVLPIVTSLYMVTALHTNYVLTQFEKSQPL
NPELLKNVTNPLVWQDRFDWDIYSTYLNIGLHEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRR
EAEFLFPNQDFSTVQYHPSIKVNSATSDAEVPSAATP

Sequences:

>Translated_597_residues
MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPGGAGLALSFNTTVWIATSITLAIGLYQLANNQAL
RYSKLTIGLWLSCALLTLPITYSNADWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYF
WLEPGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYATPLLTAPLLVVLASRTGWL
ASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTAMYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGY
GKFEAQYLLYTARQHQLNSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAMLALFVPIT
LHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITSLVLPIVTSLYMVTALHTNYVLTQFEKSQPL
NPELLKNVTNPLVWQDRFDWDIYSTYLNIGLHEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRR
EAEFLFPNQDFSTVQYHPSIKVNSATSDAEVPSAATP
>Mature_597_residues
MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPGGAGLALSFNTTVWIATSITLAIGLYQLANNQAL
RYSKLTIGLWLSCALLTLPITYSNADWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYF
WLEPGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYATPLLTAPLLVVLASRTGWL
ASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTAMYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGY
GKFEAQYLLYTARQHQLNSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAMLALFVPIT
LHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITSLVLPIVTSLYMVTALHTNYVLTQFEKSQPL
NPELLKNVTNPLVWQDRFDWDIYSTYLNIGLHEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRR
EAEFLFPNQDFSTVQYHPSIKVNSATSDAEVPSAATP

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67452; Mature: 67452

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPGGAGLALSFNTTVW
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEE
IATSITLAIGLYQLANNQALRYSKLTIGLWLSCALLTLPITYSNADWFHTLGRLVGLWAG
EHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
FTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYFWLEPGNPFGYDTEANRPYGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYATPLLTAPLLVVLASRTGWL
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHEEECHHHHHHHHHHHHCCCHHH
ASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTAMYGQGTSGFVANKADLESPRR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
FTFPQTIDMIIEKPFTGYGYGKFEAQYLLYTARQHQLNSSYPAGLASMDHPHNELLYWGV
CCCHHHHHHHHCCCCCCCCCCCCHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
EGGLLPVMGILLAACFCALRIYAAKRGTRMAMLALFVPITLHAQLEYPFYHSAIHWITFI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHH
ILIYWVDQRVARYRLASFTTLTKSLLRITSLVLPIVTSLYMVTALHTNYVLTQFEKSQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NPELLKNVTNPLVWQDRFDWDIYSTYLNIGLHEQKAELIQPYIDWSLQIIQHKPRPAFYS
CHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
NLILAYQGLGDTSRAQQIRREAEFLFPNQDFSTVQYHPSIKVNSATSDAEVPSAATP
HHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPGGAGLALSFNTTVW
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEE
IATSITLAIGLYQLANNQALRYSKLTIGLWLSCALLTLPITYSNADWFHTLGRLVGLWAG
EHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
FTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYFWLEPGNPFGYDTEANRPYGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYATPLLTAPLLVVLASRTGWL
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHEEECHHHHHHHHHHHHCCCHHH
ASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTAMYGQGTSGFVANKADLESPRR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
FTFPQTIDMIIEKPFTGYGYGKFEAQYLLYTARQHQLNSSYPAGLASMDHPHNELLYWGV
CCCHHHHHHHHCCCCCCCCCCCCHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
EGGLLPVMGILLAACFCALRIYAAKRGTRMAMLALFVPITLHAQLEYPFYHSAIHWITFI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHH
ILIYWVDQRVARYRLASFTTLTKSLLRITSLVLPIVTSLYMVTALHTNYVLTQFEKSQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NPELLKNVTNPLVWQDRFDWDIYSTYLNIGLHEQKAELIQPYIDWSLQIIQHKPRPAFYS
CHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
NLILAYQGLGDTSRAQQIRREAEFLFPNQDFSTVQYHPSIKVNSATSDAEVPSAATP
HHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA