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The map label for this gene is 227080565

Identifier: 227080565

GI number: 227080565

Start: 359197

End: 360180

Strand: Reverse

Name: 227080565

Synonym: VCM66_0337

Alternate gene names: NA

Gene position: 360180-359197 (Counterclockwise)

Preceding gene: 227080575

Following gene: 227080564

Centisome position: 12.45

GC content: 49.29

Gene sequence:

>984_bases
TTGATGCGAAGAATTTATCACTCACTCTGCGCTTTGCTTGTCATCTTAATGTTAAGTGGCTGTTTTTTTACCCACCAAGC
AGAGCAGCAATGGGACTTAGCCCCTGAAGGTTCAACCGCCTTTGGCTTAAGTCGTGACGGCCGATTTGCTCTTATCTATT
CCAAGCAGCAGCAGTTAGTACTATGGGATCTGTTGCAAGATAAGAAACTTGCCGATCTTGGCGCGCAAGATCCACAAGCT
AACCCTGTTTCCGTGATCCGTATCGCGGATAGCGAACGTTTCGCAGTCACCGCAAGCCAGAATAACTTTGCAGTTTGGGA
TCTCGCTTGGACCCAAGGCAAAGGACTTTGGTCGATTACCGATGGGCTGATCCGCGATGTTGATCTCTCCAGTGATGGCG
AACAGGTACTGCTCGGATTGACCAATGGCAAAGCGATTTACGTTGACTTAGTCAGCGGCCGCCGCATGGAGTTCCTTGCT
CACCGTGAAAAAGTCAATTCTGTCGCGCTCTCTGCCAATGGACGCTATGCGCTCACCGGAGGCAATGACTATCACGCTTA
TTTATGGGATACCAAGACTGGGCAAATCGTTCGCCAATTTGAACATGAGCAGCGAGTCAATCGGGTCACTTTACAACGAG
AAGGTAAACTGGCGTTTACTTCAGATGGTGGCAATCAAGCGCTCATTTGGGATCTCACCGCAGACAGCAAACCTATCCAG
TTACAGAGTTTTCGACGCCAACTAATTTTTTCCACCGCTCGCTTTTCTGATGATGGAAAAAAGCTGATCACGGGAACTCC
CTCTGGATTAGTCGAAGTATGGAATACGCAAGATGGTAAGAAAATCGCCAGCTTCGAATCTGAAAACAAAAAAGATCACG
GTCCTACCCAAGCTGTCGTGTATGATGCGGCTTTTGACGCCCAACAGCGCGCCGTAGCGGGCAGCTCTGCGGGTATCGCT
CAAGCTTGGCGAATGGAGAACTGA

Upstream 100 bases:

>100_bases
GTGCACAAAAACCAGCAACCAACTGGTGCACAACAAAGAGTTGTACCAATATAGCGATATGTTTCATGATTGTCTTTACA
CAACAAACGGATAATTCGAC

Downstream 100 bases:

>100_bases
AAATGCAAGAGATGTCGCTAACCCAACTTCAAGAGCGCATTGAAGATTTAGAGTGCAAATTAGCTTTTCAAGAGCAAACC
ATCGAAACTCTTAATGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQA
NPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQ
LQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIA
QAWRMEN

Sequences:

>Translated_327_residues
MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQA
NPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQ
LQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIA
QAWRMEN
>Mature_327_residues
MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQA
NPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQ
LQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIA
QAWRMEN

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 36389; Mature: 36389

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLV
CHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCEE
LWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSIT
EEHHHCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCEEEEC
DGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHREKVNSVALSANGRYALTG
CHHHEECCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCEEEEECCCCEEEEC
GNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQ
CCCEEEEEEECCHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCEEEEEEECCCCCCCH
LQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVV
HHHHHHHHHHHHHEECCCCCEEEECCCCCEEEEECCCCCCEEECCCCCCCCCCCCCEEEE
YDAAFDAQQRAVAGSSAGIAQAWRMEN
EECCCCCHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLV
CHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCEE
LWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSIT
EEHHHCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCEEEEC
DGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHREKVNSVALSANGRYALTG
CHHHEECCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCEEEEECCCCEEEEC
GNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQ
CCCEEEEEEECCHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCEEEEEEECCCCCCCH
LQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVV
HHHHHHHHHHHHHEECCCCCEEEECCCCCEEEEECCCCCCEEECCCCCCCCCCCCCEEEE
YDAAFDAQQRAVAGSSAGIAQAWRMEN
EECCCCCHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]