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The map label for this gene is rfbH [H]

Identifier: 227080465

GI number: 227080465

Start: 238906

End: 239700

Strand: Direct

Name: rfbH [H]

Synonym: VCM66_0234

Alternate gene names: 227080465

Gene position: 238906-239700 (Clockwise)

Preceding gene: 227080464

Following gene: 227080466

Centisome position: 8.26

GC content: 34.84

Gene sequence:

>795_bases
ATGTATTTTTTGGGAATGAAAATGCTTAAAGATATAGTTTCGGTTTTTTATAATTGGCGTATTGTGCATCTATTGGGGGT
TTCTACACTTAGAAGTAGATACTCTCGGTCTAAATTTGGACAAACTTGGTTAAGCATCACAATGTTCGTACAAATTCTCT
GTATAGGGCTAATTTGGTCTTTAATATGGAGAATGGGAGTAGATGATTATTTACCATATGTCGGTGTTGGACACATAATT
TACTTGTTTTATACTCAAACAATTAACGAAAGCACAGGAATCTTCGTTGCAGATGCTCGAGTATACCTAAATGATAGGCA
ACCTTTTATGCTTTCAGTCGGTGCTCACATATATCGGAACGTGCTGATTCTTCTTCATAATATACCAACCATATTTTTGC
TTGTCATATGGTCTAGCTCGGCAAACTTTGAATTTAGTTTTATGTTTGTCATTTCGTTGAGTTTAAGTCTGTTTTTCGTC
CTATTTGCTAGCTATTTTTGTGCTGTTATTTCAACGAGATTTAGAGACTTAATCCAGCTGATTGGGCTTTTGATGCAGTT
AGCTTTCTTTGTAAGTCCTGTCATGTGGAAAGTAAGCTTTCTACCCGAACAATATCAAAACTATGTGTACATAAATCCAT
TTGCTTCGCTATTGGAATTAATTAGAAATCCGATAATAGGAATCGACGTTAATCCTTTAGCATTTGTTTCGTTAGTAGCA
TGGACTTTTATAATTGGTATGGTCAGCTACTTCTCGTACAAAGTACTCGATAAAAAAGTCATTTTTTGGGTGTAG

Upstream 100 bases:

>100_bases
ATTGAGAAATTGATAAACTCTGAGGAATATATGAGACAAAATATAGATGCAATTAATAGATTGAAAATTAGTTGGAAAGA
ATCAGCAAGTAACTACGAAA

Downstream 100 bases:

>100_bases
TATGATAGAGCTATCTAATGTTAATTTGCACTACCCTGTGCCAGGGCATTTCTCACATTCTTTGCAAACAACAATATCCA
GCAAAATTGGTGGTGTACTG

Product: lipopolysaccharide/O-antigen transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHII
YLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
WTFIIGMVSYFSYKVLDKKVIFWV

Sequences:

>Translated_264_residues
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHII
YLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
WTFIIGMVSYFSYKVLDKKVIFWV
>Mature_264_residues
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHII
YLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
WTFIIGMVSYFSYKVLDKKVIFWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30785; Mature: 30785

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRN
HHHHHCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHH
VLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQL
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
HHHHHHHHHHHHHHHHHHHHCHHHHCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHH
WTFIIGMVSYFSYKVLDKKVIFWV
HHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRN
HHHHHCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHH
VLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQL
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
HHHHHHHHHHHHHHHHHHHHCHHHHCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHH
WTFIIGMVSYFSYKVLDKKVIFWV
HHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]