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The map label for this gene is rfaF [C]

Identifier: 227080443

GI number: 227080443

Start: 214866

End: 215903

Strand: Direct

Name: rfaF [C]

Synonym: VCM66_0211

Alternate gene names: 227080443

Gene position: 214866-215903 (Clockwise)

Preceding gene: 227080441

Following gene: 227080447

Centisome position: 7.43

GC content: 51.45

Gene sequence:

>1038_bases
ATGAAAAAGTTACTGGTTATTCGCAACGATAAAATTGGCGATTTTATGCTGGCTTGGCCAAGTTTCGCCATGCTGAAAGC
TTCTCTGCCGGATTGTCATATCACCGCGCTGGTGCCGAAATATACCGCCGCATTGGCAGAGCTTTGTCCATGGATTGACG
CGGTGATCATCGACCCCGGCCAACAGGCTGATAAGGCGCAGCATAAGCAACTGGTGCAAACAGTTAAAGCACAGCAGTTT
GATGCTTCCATCAACCTGTTTTCGACTATGTATAACGCACTGTTAGTGTGGAAAGCGCGCATTCCTTACCGTTTAGCGCC
GGCGACCAAATTGGCGCAGATTTTCTATCAGCACCGCATTAAGCAAAAGCGCTCGCAATCGGCCAAACCGGAATATGAAT
ACAACCTCGATTTGGTACGCGCTTTTTTGCGTGATATCGGCCAGCCGATTATTGAACCTAATGCACCGTATCTGACCTTT
CCAGCAGAGCAATTGGCAGCGCAGCGCAGCAAACTTGCTGAGCAGTTAGACATTGGCCCCGACAAAGCGTGGCTTTTTGT
GCATGCTGGCAGTGGTGGTTCAGCGAATAATCTCTCCCTTGAGCAGTACTGTGAGTTAGTCACAGGAGTGATGGATGAGC
ACAAACAAGTGGTGCTCACCGCAGGTCCCGGTGAAGAAGAGAAAGCGGCGCAATTGCAAAGTTTACTTGCTGAGCAAGGA
GTATTGGCAGCCTTGTACGCCAAAAATGACGGGTTGGTTGATTTCACCCGCTCACTGGCGTGCGCGCAGCTTTTCATTGC
GGGCTCGACAGGGCCTTTGCATATCGCGGCAGCCTTGGATGTGCCGACGGTCGGATTCTTCCCAGCCAAGCGTTCAGCAA
CGCCACTGCGCTGGCGACCACTCAACTCGCAAGGTAAGCACATCGCTTTTTGTCCGCCGCCTGCAGACGATAAAGCAAAC
CAAGAGAACATGGGTCGGATTGATATGAAGAGCGTATTGACTGAGCTTGCGCCTTGGCTGCGTAGTGTGCAGCTTTAA

Upstream 100 bases:

>100_bases
TCATCAATCAGGGAAGTGGCCTCATCCTAACAAAAAGCCTCACATTTACCTATGAAGTCGGTATGATGAGCACGCAAAAT
TTCACACCTTATCGAGCACA

Downstream 100 bases:

>100_bases
TCATTAAAAAAGGGAGCTGCGGCTCCCTTTGTCTTTGTTACTTTACTCGATAGATATCGACTTAGCGTTTGTAGTGCTCG
TCATTATCACGTGCCCACAA

Product: putative ADP-heptose--LPS heptosyltransferase II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAALAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQF
DASINLFSTMYNALLVWKARIPYRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVVLTAGPGEEEKAAQLQSLLAEQG
VLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKAN
QENMGRIDMKSVLTELAPWLRSVQL

Sequences:

>Translated_345_residues
MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAALAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQF
DASINLFSTMYNALLVWKARIPYRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVVLTAGPGEEEKAAQLQSLLAEQG
VLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKAN
QENMGRIDMKSVLTELAPWLRSVQL
>Mature_345_residues
MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAALAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQF
DASINLFSTMYNALLVWKARIPYRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVVLTAGPGEEEKAAQLQSLLAEQG
VLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKAN
QENMGRIDMKSVLTELAPWLRSVQL

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38098; Mature: 38098

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAALAELCPWIDAVIIDPG
CCCEEEEECCCCCCEEECCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHEEEECCC
QQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKARIPYRLAPATKLAQIFYQHRI
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH
KQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTFPAEQLAAQRSKLAEQLDIGP
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
DKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVVLTAGPGEEEKAAQLQSLLAEQG
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC
VLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSATPLRWRP
CEEEEEECCCCHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEC
LNSQGKHIAFCPPPADDKANQENMGRIDMKSVLTELAPWLRSVQL
CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAALAELCPWIDAVIIDPG
CCCEEEEECCCCCCEEECCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHEEEECCC
QQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKARIPYRLAPATKLAQIFYQHRI
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH
KQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTFPAEQLAAQRSKLAEQLDIGP
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
DKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVVLTAGPGEEEKAAQLQSLLAEQG
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC
VLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSATPLRWRP
CEEEEEECCCCHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEC
LNSQGKHIAFCPPPADDKANQENMGRIDMKSVLTELAPWLRSVQL
CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]