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The map label for this gene is radC [C]

Identifier: 227080437

GI number: 227080437

Start: 211250

End: 211924

Strand: Direct

Name: radC [C]

Synonym: VCM66_0205

Alternate gene names: 227080437

Gene position: 211250-211924 (Clockwise)

Preceding gene: 227080436

Following gene: 227080438

Centisome position: 7.3

GC content: 51.26

Gene sequence:

>675_bases
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Upstream 100 bases:

>100_bases
ATTGCATTGCCGCTTGAGGTGATTCGAAACTTTATTAGGGCCGCTTGCGGCCCTTTGCTTTCTCTGTTTTGTGTAAGCAA
AACCGACCCAGAGAAAAGAT

Downstream 100 bases:

>100_bases
TCAACACTTATGGTTTGCGGCATTTTTAAGCTTGTGAGTTAGCGAGAATCTGCTAATATGCCCCGACATTTTTTAACCCT
GATTCAGCTCGCACCGTAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Sequences:

>Translated_224_residues
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI
>Mature_223_residues
SLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFVQ
LQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRA
LHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=50.9345794392523, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=52.4822695035461, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788997, Length=137, Percent_Identity=52.5547445255474, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=51.0489510489511, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y205_VIBCM (C3LQH9)

Other databases:

- EMBL:   CP001233
- RefSeq:   YP_002808988.1
- ProteinModelPortal:   C3LQH9
- SMR:   C3LQH9
- GeneID:   7771498
- GenomeReviews:   CP001233_GR
- KEGG:   vcm:VCM66_0205
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25246; Mature: 25115

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRAL
CCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDR
HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
QREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRALHHNAAAVILAHNHPSGVA
CCCEEEEEEECCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCC
EPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
SLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRAL
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDR
HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
QREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRALHHNAAAVILAHNHPSGVA
CCCEEEEEEECCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCC
EPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA