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The map label for this gene is slmA [H]

Identifier: 227080434

GI number: 227080434

Start: 207328

End: 207960

Strand: Reverse

Name: slmA [H]

Synonym: VCM66_0202

Alternate gene names: 227080434

Gene position: 207960-207328 (Counterclockwise)

Preceding gene: 227080435

Following gene: 227080433

Centisome position: 7.19

GC content: 47.71

Gene sequence:

>633_bases
TTGTTGTTCATCAGCAGTGATAACCAAAAGGAAAAACGGGGCATGGCCGGCAATAAAAAAATCAATCGACGCGAAGAAAT
CCTGCAAGCTCTAGCCGAGATGCTTGAATCCAATGAAGGGGCTTCACGCATCACTACCGCAAAACTCGCTAAGCAAGTTG
GCGTGTCCGAAGCCGCGCTGTATCGCCATTTCCCGAGCAAAGCTCGTATGTTTGAAGGCTTAATTGAGTTTATTGAAGAA
TCCTTGATGTCGCGTATCAACCGCATCTTTGATGAAGAAAAAGACACGCTCAATCGCATTCGTTTGGTGATGCAATTGCT
GCTCGCCTTTGCCGAACGTAACCCGGGCTTGACACGCATTCTCTCTGGGCATGCTTTAATGTTTGAAAATGAGCGCTTGC
GCGATCGCATCAATCAGTTGTTTGAACGGATTGAAACCTCTTTGCGCCAAATTCTGCGTGAACGTAAACTCCGCGAAGGC
AAATCCTTCCCGGTGGATGAAAATATCCTCGCCGCGCAGCTGCTCGGTCAGGTGGAAGGCAGTTTGAATCGCTTTGTGCG
TTCTGATTTCAAATATCTGCCAACCGCGAATTTTGATGAATACTGGGCGCTGCTAAGTGCACAGATTAAGTGA

Upstream 100 bases:

>100_bases
CTACTTCAACCATTTTTATCAACACGCTTCGAACAACCTCTGAGCTTAGTTACACTTCAAAGGTTTCATCTTTGTCGCAG
GCGCTGAGTCTGCGACGTAG

Downstream 100 bases:

>100_bases
GTACAATGAGTCAAGATAAATACAGCAAACCTGAATTCTCCTTCTCTTTATTGCACCCAAAATACTGGGGAGTCTGGCTT
GGTTTTGGCCTACTCGCCCT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLFISSDNQKEKRGMAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEE
SLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREG
KSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK

Sequences:

>Translated_210_residues
MLFISSDNQKEKRGMAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEE
SLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREG
KSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK
>Mature_210_residues
MLFISSDNQKEKRGMAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEE
SLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREG
KSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=191, Percent_Identity=67.0157068062827, Blast_Score=252, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24379; Mature: 24379

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFISSDNQKEKRGMAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEAAL
CEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
YRHFPSKARMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEG
HHCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SLNRFVRSDFKYLPTANFDEYWALLSAQIK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLFISSDNQKEKRGMAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEAAL
CEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
YRHFPSKARMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEG
HHCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SLNRFVRSDFKYLPTANFDEYWALLSAQIK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]