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The map label for this gene is yuxH [H]

Identifier: 227080373

GI number: 227080373

Start: 131278

End: 132576

Strand: Direct

Name: yuxH [H]

Synonym: VCM66_0137

Alternate gene names: 227080373

Gene position: 131278-132576 (Clockwise)

Preceding gene: 227080372

Following gene: 227080377

Centisome position: 4.54

GC content: 48.73

Gene sequence:

>1299_bases
TTGGTTCGATGTTTATGGGCTGCGGAATGCTGTTGGCTACCGCCAAAGCGTAAGCAACCCTTTGAGGACACCATGTACAC
AACTTATGTAGCACGCCAACCGATATTGAATGCAAAGCGACACACGCTAGGTTATGAGCTGCTGTTTCGAGATGGAGAAA
AAAACGCGTTTCCTGAGTACATGGATGCCGATCGTGCTACCTACCGTCTGATTGTTGAAAACTTTTTATCCCTTGGTACC
AACCCGAGAATTGCCCGCTCGCGCTGTTTTATCAACTTTCCCCATAAAAGCTTAATTCGACGTTTGCCGCTGACTCTGCC
GCGTGAGCAGATCGTGGTAGAAATTTTGGAAACGTGCCAACCGACCGATGATCTTTTTGAGGCGGTACAAGAGCTGAGTC
AGCGAGGTTATCTGCTCGCGTTAGATGATTTTGTGTATTCACCCGCTTGGGAGCGCTTTTTACCCTACGTACAGATAGTC
AAAATCGACATCATGGCAATGGGGCTCGATAAAGCGTGTGAATTTGTGCGTGGTCGACTGGCTCAGGGAAGTCGTCGCCG
ATTTTTGGCAGAACGAGTCGAAACCGAAGATGAGTTTCATCAAGCGCGTCATGCGGGTTTTACCTTCTTCCAAGGCTATT
TTTTCAGTAAGCCAGAAATCATTAAACAGCGCTACGTCAGTCCAGAGCATGTGATTGCCATGCAGCTGTTTCGCGAAGTC
TGTCAGCCTGAAGTCGATTATGTGCGAGTAGAGCGCTTGGTCGCGCAGGACATTGCGCTCTCCTACAAGCTGCTGCGTTT
CGTAAACACTATGTCGGATCGGATCTCGGTCTCCATCTCCTCATTTCGCCAAGCCTTGGTTTATCTTGGACAGGACAAAC
TGCGCATTTTCGTCTCTTTGGCGGTCGCGTCTTATATCTCCTCCAAAAAGCCCAAGGAGCTTTACAACTTGTCGTTACAA
AGAGCGCAGTTTTGCCAGTTGATGGCGACGCATACACATTTTAAAGCGCATCGTGAACAAGCGTTTCTGATTGGCATGTT
TTCTGTGCTGGATGCCTTGCTCGATACCTCAATTGAGCAATTGGTGGAGCAACTGCCGCTGGCCGATGATGTGAAGTTAG
CACTGCGAGAGCGTGAAGGGCCACTGGGTACTTTGCTCGATCTTGAGGAATGTTTTGAAAAAGCCGATTGGCAAGGTGTG
GAGCAGCACTGCCTAGAACTGGGTTTTGATCTGGAAGATGTCCGTCAGGAATTGATTGAAGCCCAGCGTTGGAGCCAGGA
CATCAATCGATTAATTTAG

Upstream 100 bases:

>100_bases
ACTATTGATGCGATTGTCATGTTCGGATACACGGCACTGGCTGCGCAGCTAGGTCGCTATATTCGTTCACCTAACATAAT
GACCAGAATGAATAAACTGT

Downstream 100 bases:

>100_bases
TGATAAGTTAATGCACCTTTTCAACTTGACGCGGCAGCGATGTTGGCAGCAACGGCAAGTCATTTGGGGAGAGATGGTCG
GCCAGCCCGACTCTGAGGGT

Product: HD-GYP/EAL family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATYRLIVENFLSLGT
NPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIV
KIDIMAMGLDKACEFVRGRLAQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREV
CQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSLAVASYISSKKPKELYNLSLQ
RAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGV
EQHCLELGFDLEDVRQELIEAQRWSQDINRLI

Sequences:

>Translated_432_residues
MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATYRLIVENFLSLGT
NPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIV
KIDIMAMGLDKACEFVRGRLAQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREV
CQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSLAVASYISSKKPKELYNLSLQ
RAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGV
EQHCLELGFDLEDVRQELIEAQRWSQDINRLI
>Mature_432_residues
MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATYRLIVENFLSLGT
NPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIV
KIDIMAMGLDKACEFVRGRLAQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREV
CQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSLAVASYISSKKPKELYNLSLQ
RAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGV
EQHCLELGFDLEDVRQELIEAQRWSQDINRLI

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 50459; Mature: 50459

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEY
CCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCHHCCHHHHHHHHEEEECCCCCCCCHH
MDADRATYRLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQ
HCCHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCC
PTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRL
CCHHHHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
AQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREV
CCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
CQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQELIE
HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
AQRWSQDINRLI
HHHHHHHHHHCC
>Mature Secondary Structure
MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEY
CCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCHHCCHHHHHHHHEEEECCCCCCCCHH
MDADRATYRLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQ
HCCHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCC
PTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRL
CCHHHHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
AQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREV
CCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
CQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQELIE
HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
AQRWSQDINRLI
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]