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The map label for this gene is yhdW [H]

Identifier: 226950639

GI number: 226950639

Start: 3660853

End: 3661608

Strand: Direct

Name: yhdW [H]

Synonym: CLM_3623

Alternate gene names: 226950639

Gene position: 3660853-3661608 (Clockwise)

Preceding gene: 226950623

Following gene: 226950647

Centisome position: 88.1

GC content: 25.4

Gene sequence:

>756_bases
ATGAAAAATTTTCCACTTAATATAGCTCACCGTGGTGCTAGTTCTTTAGCTCCTGAAAACACCTTAGAAAGCTTTAAGAA
GGCTATAGAATTAAGATGTGATGGAATAGAACTAGATATTCATATGACAAAAGATAATCAATTAATAGTTATACATGATG
AATTTTTAGATAGGACTACTAATGGTACTGGATCTGTTAGAAATTTAACCCTTAATGAAATAAAGAAATTAGACGCTGGA
AGCCATTTTAGTAATAAATTTAAACACTCTAAAATCCCTACTCTTAAAGAAGCATTAGATTTAATAGTTCCTTCTAACAT
TTTACTTGATGTAGAAATTAAGCAATGGGAACCTGAAATAGAGAAAAATGTGATAACTATGATACAAAATTATAACTATG
AGAAAAAAACTATAATAACATCTTTTAATCCGATGGCGGTTTTAAAATGCAAAGAAATTTCCAAGGATATTAAAACAGGT
CTTTTAGTTTTTTTTCTTCAAACTAACCCTTTAGACATGAAAAAAAAATTAAAAATAGATTATCTATGCATGGATGTAAA
TTATATTAAACTACTTTCACAAAATAATATTGATACTCTAAAAAAGAATAATTTAAAAATACTAACTTTCACAGTAGATA
GAAAGGATGATATGTCATACATGATTAAACATAAAGTTAATGGCATTATAACTAATAAACCACAATTATTAAACTTATTT
AAATATAATCCCTTTAACTTTATAAAATTTAAGTAA

Upstream 100 bases:

>100_bases
GAGTTATCAGACTTTAATGTACAAATAATTAATCATATAAGTGGTATTAATCATATAATATATTAATAATATTATGGGAA
AATAAGAAAGAGAGGTAGTA

Downstream 100 bases:

>100_bases
AAATTAGATAAAAAGGTCTTTCTTTAATAAATCTAATTCATGTAAAATCCGATTAAAAAAAGGCCTTTTTATTAAAATTT
GAATTACTTCTATTTCTAAA

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTKDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKHSKIPTLKEALDLIVPSNILLDVEIKQWEPEIEKNVITMIQNYNYEKKTIITSFNPMAVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNLF
KYNPFNFIKFK

Sequences:

>Translated_251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTKDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKHSKIPTLKEALDLIVPSNILLDVEIKQWEPEIEKNVITMIQNYNYEKKTIITSFNPMAVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNLF
KYNPFNFIKFK
>Mature_251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTKDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKHSKIPTLKEALDLIVPSNILLDVEIKQWEPEIEKNVITMIQNYNYEKKTIITSFNPMAVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNLF
KYNPFNFIKFK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=258, Percent_Identity=28.2945736434109, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI260763878, Length=157, Percent_Identity=32.484076433121, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI260763880, Length=157, Percent_Identity=32.484076433121, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI260763876, Length=157, Percent_Identity=32.484076433121, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1789858, Length=242, Percent_Identity=27.2727272727273, Blast_Score=100, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17542344, Length=265, Percent_Identity=24.9056603773585, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561436, Length=155, Percent_Identity=34.1935483870968, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17564564, Length=155, Percent_Identity=28.3870967741935, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29079; Mature: 29079

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTKDNQLIVIHDEFLDRTT
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHEEECCEEEEEEECCCCCEEEEEHHHHCCCC
NGTGSVRNLTLNEIKKLDAGSHFSNKFKHSKIPTLKEALDLIVPSNILLDVEIKQWEPEI
CCCCCEEEEEHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHH
EKNVITMIQNYNYEKKTIITSFNPMAVLKCKEISKDIKTGLLVFFLQTNPLDMKKKLKID
HHHHHHHHHCCCCCCEEEEEECCCEEEEEHHHHHHHHCCCEEEEEEECCCCCCHHHCEEE
YLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNLF
EEEECCCEEEEECCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCCCEEEEE
KYNPFNFIKFK
ECCCEEEEEEC
>Mature Secondary Structure
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTKDNQLIVIHDEFLDRTT
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHEEECCEEEEEEECCCCCEEEEEHHHHCCCC
NGTGSVRNLTLNEIKKLDAGSHFSNKFKHSKIPTLKEALDLIVPSNILLDVEIKQWEPEI
CCCCCEEEEEHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHH
EKNVITMIQNYNYEKKTIITSFNPMAVLKCKEISKDIKTGLLVFFLQTNPLDMKKKLKID
HHHHHHHHHCCCCCCEEEEEECCCEEEEEHHHHHHHHCCCEEEEEEECCCCCCHHHCEEE
YLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNLF
EEEECCCEEEEECCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCCCEEEEE
KYNPFNFIKFK
ECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]