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The map label for this gene is ydcP [H]

Identifier: 226950553

GI number: 226950553

Start: 3563565

End: 3565931

Strand: Reverse

Name: ydcP [H]

Synonym: CLM_3529

Alternate gene names: 226950553

Gene position: 3565931-3563565 (Counterclockwise)

Preceding gene: 226950554

Following gene: 226950552

Centisome position: 85.82

GC content: 26.91

Gene sequence:

>2367_bases
ATGAGAAAAATAGAATTACTAGCTCCCGCAGGAAGCATGGAAAGTTTGTATGCTGCAGTACAGGCAGGGGCAGATGCAGT
ATACATGGGCGGAAGCAAATTTTCTGCTAGAGCTTATGCTAATAATTTTGATGATGAGCAATTGAAAGAGGCTATAAACT
ATTGCCATTTATATGGTGTTAAAGTATATATTACAGTTAATACATTAATAAAAGAAGAGGAAATAAAAGAAGCAATAAAG
TATATAGGATTTTTATATTCTATAGGGGTAGATGCTTTAATAATACAGGATACTGGAATAGCAAAATTAATAAAAGAAAA
CTTACCAGATTTTGAAATTCATGCATCTACCCAAATGACTATACATAATGGAGAAGGTGCTATATTTTTAAAAGAATTAG
GTTTTAAAAGAATAGTTTTATCACGAGAACTTTCATTAAAAGAAATAGAATATATTTCAAAGGACTTAGATATAGAAACG
GAAATATTTGTACATGGAGCTCTTTGTATTTGTTATTCAGGGCAATGTTTAATGAGTAGTATATTAGGTGGAAGAAGCGG
AAATAGAGGAAGATGTGCTCAACCTTGTAGGCTTCCATATACATTGATAAATGAAAAGGATGATAAGGAAACAAAGGGGT
ATCTATTAAGTCCTAAGGATATATGTAATATAGAAAACATGGGAGATTTAATAAAGGCTGGTGCTACATCTTTTAAGATA
GAGGGAAGAATGAAAAGACCAGAATATGTGGCAGGAGTAATTAGAAGTTATAGAAAAGCTATAGATGCAGCTATAAATAA
AGAAAATTTTGAAGAAGAACAAAATAAAAAAGAGTTAATGCAATTATTTAATAGAGAGGGTTTTTCAAAGGCATATCTTT
ATGGAAATAAGGGTAAAGATATGATGGCATATTCTTTTCCTAAAAATACAGGATTACTTCTAGGAGAGGTAAATAAGGAT
AAAAGTATAGAATTAGAAGAAAATTTAAAAATAAAAGATGGTATAAGAAATGCTGATAAAGGTTTTATAGTGTCTAGTAT
AATTAAGGATAATAAAGAAGTAGAAAAAGCCTACAAAGGAGATTTAGTAAAAATAAAACCTTCAAATTATAAGTTTAAGG
ATAAATTATATAAAACCTCAGATACGGAACTTTTACAGTCCTTAGGTAAAATATATGAGGATAAATTTAATAAGAAAATT
TATTTAGAAGCTAATGTAGAGTTTAAAGTAGGCGAAAAAATAAAATTAAGTTGCAGATACAATGGAGAAGAATATTTTGC
AGAAGGGAAAGAAATAGAAAAGGCACTAAAAAAACCTTTATCCATGGAAAAAATAGAAGAAAATTTAATGAAAAGTGGGG
AAACTCCTTTCAAGATAAATAAAATTAAATTTGACTCTTATGAAGAAGGATTTTTACCTGTTTCAGAGATAAATAATTGC
CGTAGAATACTTATAAATTCCATAGAAGAAAAAATAATACAAAATAATCCACATTGTGGAAAAATAAAAAGGGTTAATGT
GGATAATATATACAGTAACATAAATGGAATAAAAGAAAATGATTTACCAAAGTATATATTTTCAATATATACCTATGAAC
AGTTAAAAGCTGTAGCGGATAATGGCTTTAAAAATATAATAGTAGATTTATTTACAAGGAATCCATTAAACTTACATAAA
ATAAAAGGATTATATCAGGATTTAAATATATATTTAAAAGCTCCTAATATTATAAAGAGTAAATTTGATTATGTAGAAAA
GATAATAGAAGAGAATCTATATAACATAAAAGGTATAGTAACGGCTAATCTAGGTATAGTAAATAAGTTTAATAATAGAA
CAAAGATAATAGGAGACTATAAATTAAATATATTTAATAGTTTCGCAGGGGATTTTTATAAGGACTTTATTAAAGGAAGT
TGTTTAAGTATAGAGCTTAATAAAAAAGAAGTAAAATCTATAACTAAACATATGAATTTAGACAGTCAAATGCTTATATA
TGGTAAAATAGAAAATATGGTCAGTGAATACTGTCCTATAGGCAGTACATTTGGAGGTAAAAATAGTTATTCTACTTGTA
ATAAAGCTTGTGAAAAAGGAATTTATACATTAAAGGATAGGATGAGTGTTAAATTCCCAGTTAAAACAGATATATTCTGT
AGAAGTCATATATACAATAATTCAGATATTAATTTAATAGGAAATATAGAGGAACTAAGGACATTTGGAATTAATAGTTT
TAGATTAGATTTTCTAGAGGAGAATTATGAAGAAATTGAATATATATTAAAATCTCTTAAAGAAGAAAATTGGAAGAGAG
ATTTTAAAAATTATACAAGAGGTCATTATAAAAGAGGGGTAGAATAA

Upstream 100 bases:

>100_bases
AATTACATAATTTACACAGATAAATAATAATGAATACAACATTTTAAATATGTTTAATCTATTGTATAATAAACCTTAGA
ATATTTTAGGAGAGATGAAC

Downstream 100 bases:

>100_bases
CTTAATAGAATATTTATACAATAAATCAGATATGGGTATATAGCAGTTATAATTAAGCTGAGAATAGATAGGATTAAAAA
ATAATAGAAAAAGTAACAGA

Product: peptidase, U32 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRKIELLAPAGSMESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYLLSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIELEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSKFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE

Sequences:

>Translated_788_residues
MRKIELLAPAGSMESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYLLSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIELEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSKFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE
>Mature_788_residues
MRKIELLAPAGSMESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYLLSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIELEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSKFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=515, Percent_Identity=35.1456310679612, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI1788397, Length=354, Percent_Identity=33.0508474576271, Blast_Score=174, Evalue=2e-44,
Organism=Escherichia coli, GI1789548, Length=312, Percent_Identity=30.7692307692308, Blast_Score=148, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 90325; Mature: 90325

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIELLAPAGSMESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHEEEEE
KVYITVNTLIKEEEIKEAIKYIGFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMT
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEEECCEEEE
IHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYLLSPKDICNIENMGDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCHHHCCCHHHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGEVNKDKSIELEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKG
CEEEECCCCCCEEEEECCCCCCEEHHCCCCHHHCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVAD
HHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSKFDYVEKIIEENLYNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHCEEEEE
TANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSITKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
CCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCEEECCCCCCCEE
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTR
HHHCCCCCCCEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHYKRGVE
HHHHCCCC
>Mature Secondary Structure
MRKIELLAPAGSMESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHEEEEE
KVYITVNTLIKEEEIKEAIKYIGFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMT
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEEECCEEEE
IHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYLLSPKDICNIENMGDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCHHHCCCHHHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGEVNKDKSIELEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKG
CEEEECCCCCCEEEEECCCCCCEEHHCCCCHHHCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVAD
HHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSKFDYVEKIIEENLYNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHCEEEEE
TANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSITKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
CCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCEEECCCCCCCEE
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTR
HHHCCCCCCCEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHYKRGVE
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]