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The map label for this gene is rplY [H]

Identifier: 226950546

GI number: 226950546

Start: 3554374

End: 3554910

Strand: Reverse

Name: rplY [H]

Synonym: CLM_3522

Alternate gene names: 226950546

Gene position: 3554910-3554374 (Counterclockwise)

Preceding gene: 226950548

Following gene: 226950545

Centisome position: 85.55

GC content: 25.88

Gene sequence:

>537_bases
ATGGAAAAATTATTTATACAAAAAAGAAATTGTAAAAATAGTAATAAAGTAAGAAGAGATGGAAAAGTACCAGGTATAAT
ATATGGAAAAAATTTAAACAATTTAATGTTCGAAGTAGGAGAAATAGAATTAAATAGTATGATTTCACAGGTAGGGGAAC
ATGGAGTAACAGATATAAATTATGAAGGAACAGATTATAAAGTTCTTATAAAAGAAGTTCAAAAGGATCCAGTAAAAAAG
AACGTAATACATATAGATTTAGAAAATGTTACTAATAGTTCTAATCTAATTAATGCAGAAATACCAATACTTTTTTCAGG
TGATGAATTAATCATGAAGAAGGGAGGAGTAGTTCAAAAAGAAAAAAATAGTGTTAAGGTAAGATGTCCGGAGGAAAAAC
TTCCTAATAATATAATGGTAGATTTATCTCAATATGATATTGGTAAGACATTCAGAATATCTGATTTAGAATTAGGAGAA
GATATAACTTTTATGGAGAATTTAGATAGTACTATAGTTTCTATATTCTTTGGATAA

Upstream 100 bases:

>100_bases
TTCAAATGCAATATATATATATATAAAATTTATTATATGCTTTTTTTATTGTATAAATACATAACATTTTGTAAATAATA
CAAAAAGTGGAGGGATGAAT

Downstream 100 bases:

>100_bases
TAATATAAGGAAATTGTGACTTAAAAGGTAGTTTACCTGTGGCCTATTGAAAAGGGATATGTGTCTAGAAAGGCAAATCA
ATTCGCTAAGAGATTCTAAT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MEKLFIQKRNCKNSNKVRRDGKVPGIIYGKNLNNLMFEVGEIELNSMISQVGEHGVTDINYEGTDYKVLIKEVQKDPVKK
NVIHIDLENVTNSSNLINAEIPILFSGDELIMKKGGVVQKEKNSVKVRCPEEKLPNNIMVDLSQYDIGKTFRISDLELGE
DITFMENLDSTIVSIFFG

Sequences:

>Translated_178_residues
MEKLFIQKRNCKNSNKVRRDGKVPGIIYGKNLNNLMFEVGEIELNSMISQVGEHGVTDINYEGTDYKVLIKEVQKDPVKK
NVIHIDLENVTNSSNLINAEIPILFSGDELIMKKGGVVQKEKNSVKVRCPEEKLPNNIMVDLSQYDIGKTFRISDLELGE
DITFMENLDSTIVSIFFG
>Mature_178_residues
MEKLFIQKRNCKNSNKVRRDGKVPGIIYGKNLNNLMFEVGEIELNSMISQVGEHGVTDINYEGTDYKVLIKEVQKDPVKK
NVIHIDLENVTNSSNLINAEIPILFSGDELIMKKGGVVQKEKNSVKVRCPEEKLPNNIMVDLSQYDIGKTFRISDLELGE
DITFMENLDSTIVSIFFG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 20153; Mature: 20153

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLFIQKRNCKNSNKVRRDGKVPGIIYGKNLNNLMFEVGEIELNSMISQVGEHGVTDIN
CCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHEEECCCHHHHHHHHHHHCCCCCCC
YEGTDYKVLIKEVQKDPVKKNVIHIDLENVTNSSNLINAEIPILFSGDELIMKKGGVVQK
CCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCEEEEECCCEEEE
EKNSVKVRCPEEKLPNNIMVDLSQYDIGKTFRISDLELGEDITFMENLDSTIVSIFFG
CCCCEEEECCHHHCCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHCCCEEEEECC
>Mature Secondary Structure
MEKLFIQKRNCKNSNKVRRDGKVPGIIYGKNLNNLMFEVGEIELNSMISQVGEHGVTDIN
CCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHEEECCCHHHHHHHHHHHCCCCCCC
YEGTDYKVLIKEVQKDPVKKNVIHIDLENVTNSSNLINAEIPILFSGDELIMKKGGVVQK
CCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCEEEEECCCEEEE
EKNSVKVRCPEEKLPNNIMVDLSQYDIGKTFRISDLELGEDITFMENLDSTIVSIFFG
CCCCEEEECCHHHCCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]