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The map label for this gene is 226950473

Identifier: 226950473

GI number: 226950473

Start: 3472149

End: 3472559

Strand: Direct

Name: 226950473

Synonym: CLM_3448

Alternate gene names: NA

Gene position: 3472149-3472559 (Clockwise)

Preceding gene: 226950432

Following gene: 226950474

Centisome position: 83.56

GC content: 27.49

Gene sequence:

>411_bases
TTGGCAGAAATAAAAGATAGGTTAAAATGTGAAAGATTAAGAAAAGATTTAAATCAAACTGAATTGGCAAAATTTTTAAA
TGTATCAAAGCAAACAGTTTCCAATTGGGAAAATGGTAACAGAATTCCTGATACCCTTACCTTATCTAAGTTAGCTGACT
TCTTTAATTGCTCCGTAGATTATATTTTAGGAAGATCTGAAAATAGAAATGGTATAATTTCTAAAGCTAATATAGATGGA
AGTAATTACGAATTTGAATTAGATAAGAGTATATTTCCAAATGGCATAACTAGAGAACAAATGATAAATTATATTAAGGA
ATTAGAAGAAAGAAATAAAGAATTAGAAAAAGAGGCTGAGATATCTAGAAAATTAAAAGAAGCTGGCTTCGATTTCAATC
CCGATAAATAA

Upstream 100 bases:

>100_bases
TATTTTATCATTTTTCTCAAAAAATATTCTTATAGTTTACATCAGTTTTAAAAAGTCAACATATGGTTTATAATATAGTA
TAAATAGAGGGGTGAAAAAG

Downstream 100 bases:

>100_bases
AATATTCTAAAAATTAATTATTTAAAATTAAAATACAAGTATGGAAAACTAACAAATATATATGTATTCATGATGTTATG
TTTATAATTACATGAAATTC

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYILGRSENRNGIISKANIDG
SNYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAEISRKLKEAGFDFNPDK

Sequences:

>Translated_136_residues
MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYILGRSENRNGIISKANIDG
SNYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAEISRKLKEAGFDFNPDK
>Mature_135_residues
AEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYILGRSENRNGIISKANIDGS
NYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAEISRKLKEAGFDFNPDK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15839; Mature: 15708

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHH
YILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAE
HHCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISRKLKEAGFDFNPDK
HHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHH
YILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAE
HHCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISRKLKEAGFDFNPDK
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA