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The map label for this gene is yddE [C]

Identifier: 226950432

GI number: 226950432

Start: 3437206

End: 3437760

Strand: Direct

Name: yddE [C]

Synonym: CLM_3404

Alternate gene names: 226950432

Gene position: 3437206-3437760 (Clockwise)

Preceding gene: 226950403

Following gene: 226950473

Centisome position: 82.72

GC content: 26.49

Gene sequence:

>555_bases
ATGAATATCTATCAAGTAAATACTTTTACTAACAAAGTTTTTTTAGGAAATTCTATTGGAGTATGCTTATTAAACGAACC
CGTAGAAAAGGATTACATGGAAAATGTAGCACTAGAACTTAACCTATCAGAAACCATTTTTTTATGTAAGGACACTGATG
GATATAAAACAAATATCTTTTCACCCAAAGGTGAATTGTGCTTATGTGTAAAATCTATTTTAGCTGCTTCTCATATTTTA
TGGCAAGAAGGTCTTATAGACGAAAAAGAACATATTAAATTCTATTGTAGGGAAGATGTTTTAGAAACAAAATTAAATAC
TGATTTTATAGAAATAAAAATCCCTTTAACTCTTGAGAAAAAATTATGTTTATTACATAACTTTTCTAAAGCGTTAGAAA
TAGAAGAAGATTTAACTATAGATTATTTAGAAAGCCTAAAAGAACAAAAAACTTATATAAAAGGAAACAGCAAATTTAAA
ATTAGATTAGAAGGTGAAAATATAATTTTATCCGGTTCAGCCATAACAGTTATTGTAGGGGACCTTATAATTTAA

Upstream 100 bases:

>100_bases
AAATTTAAAAATAAATGCAAAATTTCATCAAATACTTAATTTTATTTTTTTATTCTATGTTATAATATATACGTATTATG
TTGGTTTGGGGGTACAAATA

Downstream 100 bases:

>100_bases
TTATATTCAACCTGTAGTAAATAAAAAACTTCATCTGCTAAAAAGATGAAGTTTTTTATTATTCCATAGCTATCAAATCC
ACTTTTATTACATTTTTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNIYQVNTFTNKVFLGNSIGVCLLNEPVEKDYMENVALELNLSETIFLCKDTDGYKTNIFSPKGELCLCVKSILAASHIL
WQEGLIDEKEHIKFYCREDVLETKLNTDFIEIKIPLTLEKKLCLLHNFSKALEIEEDLTIDYLESLKEQKTYIKGNSKFK
IRLEGENIILSGSAITVIVGDLII

Sequences:

>Translated_184_residues
MNIYQVNTFTNKVFLGNSIGVCLLNEPVEKDYMENVALELNLSETIFLCKDTDGYKTNIFSPKGELCLCVKSILAASHIL
WQEGLIDEKEHIKFYCREDVLETKLNTDFIEIKIPLTLEKKLCLLHNFSKALEIEEDLTIDYLESLKEQKTYIKGNSKFK
IRLEGENIILSGSAITVIVGDLII
>Mature_184_residues
MNIYQVNTFTNKVFLGNSIGVCLLNEPVEKDYMENVALELNLSETIFLCKDTDGYKTNIFSPKGELCLCVKSILAASHIL
WQEGLIDEKEHIKFYCREDVLETKLNTDFIEIKIPLTLEKKLCLLHNFSKALEIEEDLTIDYLESLKEQKTYIKGNSKFK
IRLEGENIILSGSAITVIVGDLII

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 20999; Mature: 20999

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYQVNTFTNKVFLGNSIGVCLLNEPVEKDYMENVALELNLSETIFLCKDTDGYKTNIF
CCEEEEECCCCEEEECCCCCEEEECCCHHHHHHCCEEEEEECCCEEEEEECCCCCEEEEE
SPKGELCLCVKSILAASHILWQEGLIDEKEHIKFYCREDVLETKLNTDFIEIKIPLTLEK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHHHHHHHCCCCEEEEEEEEEECH
KLCLLHNFSKALEIEEDLTIDYLESLKEQKTYIKGNSKFKIRLEGENIILSGSAITVIVG
HHHHHHCCHHHEECCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCEEEEECCEEEEEEE
DLII
EECC
>Mature Secondary Structure
MNIYQVNTFTNKVFLGNSIGVCLLNEPVEKDYMENVALELNLSETIFLCKDTDGYKTNIF
CCEEEEECCCCEEEECCCCCEEEECCCHHHHHHCCEEEEEECCCEEEEEECCCCCEEEEE
SPKGELCLCVKSILAASHILWQEGLIDEKEHIKFYCREDVLETKLNTDFIEIKIPLTLEK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHHHHHHHCCCCEEEEEEEEEECH
KLCLLHNFSKALEIEEDLTIDYLESLKEQKTYIKGNSKFKIRLEGENIILSGSAITVIVG
HHHHHHCCHHHEECCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCEEEEECCEEEEEEE
DLII
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]