Click here to switch to the map view.

The map label for this gene is 226950472

Identifier: 226950472

GI number: 226950472

Start: 3471748

End: 3471957

Strand: Reverse

Name: 226950472

Synonym: CLM_3447

Alternate gene names: NA

Gene position: 3471957-3471748 (Counterclockwise)

Preceding gene: 226950477

Following gene: 226950471

Centisome position: 83.56

GC content: 28.1

Gene sequence:

>210_bases
ATGACAACAGCAAAAAAATTAAAAGCTTATAGATGCCTAAAAGGTGCAAAGCAAGAGGATATAGCAAGACTAATAGGAGT
GTCTCTAAATACGTATAACTTTAAAGAAAATGGTAAGAAATCTTTTACCTTAAATGAGGCTAAGATTATATCAGATTTTT
TTGATACTACTATAGACGAACTTTTTTTTAGAAGAAATGGTAAACTTTAA

Upstream 100 bases:

>100_bases
GATAAAATACAGTTGAAAGTATTCTTAATGTTGACTATAATAAAAATATAAATAGTATTCTTATAGTTTACTTAAAAAAG
CTATTAAGGGGGTGGGTTTT

Downstream 100 bases:

>100_bases
GAATACTTGCGAATTTATAGTTTAATATTGAGAGGAATAAATCCTAAGGAGGAATCCTCAAGTGACAGTAATAAAAACAA
AAGAATATAGAATAATAAGA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTTAKKLKAYRCLKGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDELFFRRNGKL

Sequences:

>Translated_69_residues
MTTAKKLKAYRCLKGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDELFFRRNGKL
>Mature_68_residues
TTAKKLKAYRCLKGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDELFFRRNGKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7952; Mature: 7821

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAKKLKAYRCLKGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDE
CCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHH
LFFRRNGKL
HHHHCCCCC
>Mature Secondary Structure 
TTAKKLKAYRCLKGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDE
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHH
LFFRRNGKL
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA