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The map label for this gene is yqeI [H]

Identifier: 226950409

GI number: 226950409

Start: 3416189

End: 3416482

Strand: Reverse

Name: yqeI [H]

Synonym: CLM_3380

Alternate gene names: 226950409

Gene position: 3416482-3416189 (Counterclockwise)

Preceding gene: 226950410

Following gene: 226950408

Centisome position: 82.22

GC content: 25.85

Gene sequence:

>294_bases
ATGATAACAACAAAACAGAGAAGTTATTTAAGATCTTTAGCTAATAAGATGGATGCTATATTTCAAATAGGTAAAGATGG
ATTAAATGATAACTTATTAAAACAAATAGATGATGCATTAGAAGCTAGAGAATTAATAAAGATATCTGTTCTAAAAAATA
GTTTTTATACAGCAAAAGAAGCTTCAAGTGAAATATGTGAGGAATTAAATTGTGAAGGGATACAATGTATAGGGAGTAAA
GTGGTTTTATATAGAAAATCAAAAAAGAAACCTAAAATAGAATTGCCACAATAA

Upstream 100 bases:

>100_bases
AATTAATGGAAATGGGTATTGAAGATGGTGATGTTGTACGATTAAATGACTTTGAATTTGACTTTTTATTATAATATATG
ACTTTAGGAGGAATACAATA

Downstream 100 bases:

>100_bases
GATAAAAAATAACATTAAATTTCATATGAAAATTTTAGTTGTATTTTTAATTTAAGTAATTTTAAAATTAATTTTGGCTA
CCTATACTATATATAAATTC

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MITTKQRSYLRSLANKMDAIFQIGKDGLNDNLLKQIDDALEARELIKISVLKNSFYTAKEASSEICEELNCEGIQCIGSK
VVLYRKSKKKPKIELPQ

Sequences:

>Translated_97_residues
MITTKQRSYLRSLANKMDAIFQIGKDGLNDNLLKQIDDALEARELIKISVLKNSFYTAKEASSEICEELNCEGIQCIGSK
VVLYRKSKKKPKIELPQ
>Mature_97_residues
MITTKQRSYLRSLANKMDAIFQIGKDGLNDNLLKQIDDALEARELIKISVLKNSFYTAKEASSEICEELNCEGIQCIGSK
VVLYRKSKKKPKIELPQ

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=96, Percent_Identity=34.375, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 11007; Mature: 11007

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTKQRSYLRSLANKMDAIFQIGKDGLNDNLLKQIDDALEARELIKISVLKNSFYTAKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSEICEELNCEGIQCIGSKVVLYRKSKKKPKIELPQ
HHHHHHHHHCCCCEEHHCCHHEEEECCCCCCCCCCCC
>Mature Secondary Structure
MITTKQRSYLRSLANKMDAIFQIGKDGLNDNLLKQIDDALEARELIKISVLKNSFYTAKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSEICEELNCEGIQCIGSKVVLYRKSKKKPKIELPQ
HHHHHHHHHCCCCEEHHCCHHEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]