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The map label for this gene is yabJ [H]

Identifier: 226950405

GI number: 226950405

Start: 3413008

End: 3413388

Strand: Reverse

Name: yabJ [H]

Synonym: CLM_3376

Alternate gene names: 226950405

Gene position: 3413388-3413008 (Counterclockwise)

Preceding gene: 226950406

Following gene: 226950404

Centisome position: 82.15

GC content: 31.76

Gene sequence:

>381_bases
ATGGAAAAAGTAGTTATAAGTACAAAAAAAGCTCCAGCAGCATTAGGTGCATATTCACAGGCTATAAAAATAGGAGACTT
ATTATTTACTTCAGGACAAATTCCACTAGATCCAGCAACAGGAGAATTAATTTCTGATGATATCAAAAAAGCAACAGAAA
GATCTATGGAAAACTTAAAAGCTGTTTTAGAGGAAGCAGGAACTTCCTTTGAAAAGGTAGTAAAGACAGTTATCTTTATA
AAAGATATGAATGACTTTGCAGCAGTAAATGAAGTATATGCAAAATATTTTAAAGAAAATCCACCTGCAAGATCTTGTGT
GCAAGTTGGTAAATTACCAAAAGATGCTTTAGTAGAAATAGAATTAGTGGCTATGATATAG

Upstream 100 bases:

>100_bases
AAATATAGAGAAAAATATCCAATCTGATGAAAACTTTGATATAATAATATTATTAGGAAAAGATTTTGCTAATAATAGAA
ATTAAGAGGAGGATTATTTT

Downstream 100 bases:

>100_bases
CATACATAAAATGAAGGGATTTTTCCCTTCATTTTTGGTTTTTAGGAATTTTAATGATTTATAATTAACCAATAAAAAGT
TTGATTATCTTCTACCTAAT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEKVVISTKKAPAALGAYSQAIKIGDLLFTSGQIPLDPATGELISDDIKKATERSMENLKAVLEEAGTSFEKVVKTVIFI
KDMNDFAAVNEVYAKYFKENPPARSCVQVGKLPKDALVEIELVAMI

Sequences:

>Translated_126_residues
MEKVVISTKKAPAALGAYSQAIKIGDLLFTSGQIPLDPATGELISDDIKKATERSMENLKAVLEEAGTSFEKVVKTVIFI
KDMNDFAAVNEVYAKYFKENPPARSCVQVGKLPKDALVEIELVAMI
>Mature_126_residues
MEKVVISTKKAPAALGAYSQAIKIGDLLFTSGQIPLDPATGELISDDIKKATERSMENLKAVLEEAGTSFEKVVKTVIFI
KDMNDFAAVNEVYAKYFKENPPARSCVQVGKLPKDALVEIELVAMI

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=45.5284552845528, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=47.6190476190476, Blast_Score=127, Evalue=2e-31,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=47.1544715447154, Blast_Score=126, Evalue=4e-31,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=35.7142857142857, Blast_Score=86, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=47.1544715447154, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=47.1544715447154, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=47.1544715447154, Blast_Score=121, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=40.8333333333333, Blast_Score=104, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=44.6601941747573, Blast_Score=94, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=44.6280991735537, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13705; Mature: 13705

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVVISTKKAPAALGAYSQAIKIGDLLFTSGQIPLDPATGELISDDIKKATERSMENLK
CCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AVLEEAGTSFEKVVKTVIFIKDMNDFAAVNEVYAKYFKENPPARSCVQVGKLPKDALVEI
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHH
ELVAMI
EEEEEC
>Mature Secondary Structure
MEKVVISTKKAPAALGAYSQAIKIGDLLFTSGQIPLDPATGELISDDIKKATERSMENLK
CCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AVLEEAGTSFEKVVKTVIFIKDMNDFAAVNEVYAKYFKENPPARSCVQVGKLPKDALVEI
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHH
ELVAMI
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]