Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
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Accession | NC_012563 |
Length | 4,155,278 |
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The map label for this gene is selA [H]
Identifier: 226950400
GI number: 226950400
Start: 3406988
End: 3408376
Strand: Reverse
Name: selA [H]
Synonym: CLM_3371
Alternate gene names: 226950400
Gene position: 3408376-3406988 (Counterclockwise)
Preceding gene: 226950401
Following gene: 226950399
Centisome position: 82.03
GC content: 29.95
Gene sequence:
>1389_bases ATGGATAAAAAACAATTATTACGTAATTTACCTAAAATAGATGAGCTGTTGAAGGAAGAAATTGTTAATGGATATCTACA AGAAAATTCTAGAACCTTAGTAGTAGATAGTCTTAGGCAATCTATAGATCACTATAGAGGCGAGATTTTAAAAAATAATA TAGATAGTTTTACTAAGGAAAATGTTGTAAATTATTTCATAGATACTTTAGAAGAAAATAAAAGTACTAAATTTAAAAAA GTTATTAATGCTACAGGTGTGGTAATACATACAAATTTAGGAAGATCCTTATTAGCTAAAGAGGCTATAGAAAATGTGGT AAAGGTATCTGAAAACTATAGCAATTTAGAATATGACTTAAAAGAGGGGAAAAGAGGATCAAGATATAGTCATGTAGAGG AATTGATTAAGAAAGTTACAGGGGCTGAAGCTGCTATGGTAGTTAATAACAATGCAGCAGCAGTTATGTTAGCTCTAAAT ACCCTTTGTGAAGAAAGAGAAGCTATAGTATCAAGAGGTCAGCTAGTAGAGATAGGCGGATCTTTCAGGGTACCAGATGT AATGAAGTTTAGTAGAGCTCATCTAGTTGAAGTAGGTACTACAAATAGAACACATTTATATGATTATGAAAATAATATAA ATGAAAATACAGGAGTTTTACTTAAAGTCCATACTTCAAATTTTAAAATAATGGGTTTTACAGAAGAGGTATCTTCAGAA GAAATGGTACAATTAGGTGGAAAATATAAATTACCTGTAATGGAGGACATAGGTAGTGGTACTTTGGTTGATTTTTCTAA GTATGGATTTACTTATGAACCAACTGTTCAAAGTAGCCTTGAAAAGGGGGTAGATGTGGTAACATTTAGTGGAGATAAAA TGTTAGGAGGACCACAAGCAGGAATAATAGTAGGTAAAAAGAAATACATAGATAAAATGAAAAAGAATCAATTAACTAGA GCCTTAAGAATAGATAAAATGACTTTGGCGGCTTTAGAAGGAACTTTAAAATGCTATATAGACGAAAAAGAAGCTATAGA AAATATTCCAACATTAAACATGATTTTAAGTTCCGAAGATATCCATAAAAAAAGAGCTCAAAGATTGAAAAGAAGACTTC AAAATAATGTTAAAGACTTTAATTTTAAAGTATCAGAGGATCTTTCTATGGTAGGCGGAGGCTCTATGCCAGGGGAGAGA ATACCTACCTATGTGGTAAAAGTGAATAGTGATAAAATAACAGCAGAAAAGATAGAAGAAAAATTAAGATTAAGTAAAAA TCCTATAATAGTTAGAGTAAGCAAAGATGAAGTAATATTAGACGTGAGAACTTTGTTTGAGAGAGATTTTAATATAATAG TAGAAGAATTTAAAAAATTATTAAAATAA
Upstream 100 bases:
>100_bases AAGTAAACAAGATAAATATATAATAGTTGAATAAAATATTATACTATTTATGACAATAAGTATTGAATATACAACATAAT TAAGGAATGGAGAATAGGGC
Downstream 100 bases:
>100_bases TTGAGAATGGTGATGTTTATGAAGAACGTAATAATAGGAACAGCTGGACATATAGATCATGGTAAAACCACTTTAATAAA AGCATTAACAGGAAGAGAAA
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK
Sequences:
>Translated_462_residues MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK >Mature_462_residues MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=448, Percent_Identity=42.6339285714286, Blast_Score=337, Evalue=8e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 52267; Mature: 52267
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKE CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH NVVNYFIDTLEENKSTKFKKVINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDL HHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEH KEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALNTLCEEREAIVSRGQLVEIGG HCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEECC SFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE CCCCCHHHHHCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEHHHHCHH EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQA HHHHCCCCCCCCHHHHCCCCCEEEHHHCCCEECCHHHHHHHCCCEEEEECCCCCCCCCCC GIIVGKKKYIDKMKKNQLTRALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSED CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEECCHH IHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGERIPTYVVKVNSDKITAEKIEE HHHHHHHHHHHHHHCCHHHCCEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHH KLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK HHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKE CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH NVVNYFIDTLEENKSTKFKKVINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDL HHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEH KEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALNTLCEEREAIVSRGQLVEIGG HCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEECC SFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE CCCCCHHHHHCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEHHHHCHH EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQA HHHHCCCCCCCCHHHHCCCCCEEEHHHCCCEECCHHHHHHHCCCEEEEECCCCCCCCCCC GIIVGKKKYIDKMKKNQLTRALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSED CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEECCHH IHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGERIPTYVVKVNSDKITAEKIEE HHHHHHHHHHHHHHCCHHHCCEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHH KLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK HHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA