Definition Clostridium botulinum A2 str. Kyoto chromosome, complete genome.
Accession NC_012563
Length 4,155,278

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The map label for this gene is selA [H]

Identifier: 226950400

GI number: 226950400

Start: 3406988

End: 3408376

Strand: Reverse

Name: selA [H]

Synonym: CLM_3371

Alternate gene names: 226950400

Gene position: 3408376-3406988 (Counterclockwise)

Preceding gene: 226950401

Following gene: 226950399

Centisome position: 82.03

GC content: 29.95

Gene sequence:

>1389_bases
ATGGATAAAAAACAATTATTACGTAATTTACCTAAAATAGATGAGCTGTTGAAGGAAGAAATTGTTAATGGATATCTACA
AGAAAATTCTAGAACCTTAGTAGTAGATAGTCTTAGGCAATCTATAGATCACTATAGAGGCGAGATTTTAAAAAATAATA
TAGATAGTTTTACTAAGGAAAATGTTGTAAATTATTTCATAGATACTTTAGAAGAAAATAAAAGTACTAAATTTAAAAAA
GTTATTAATGCTACAGGTGTGGTAATACATACAAATTTAGGAAGATCCTTATTAGCTAAAGAGGCTATAGAAAATGTGGT
AAAGGTATCTGAAAACTATAGCAATTTAGAATATGACTTAAAAGAGGGGAAAAGAGGATCAAGATATAGTCATGTAGAGG
AATTGATTAAGAAAGTTACAGGGGCTGAAGCTGCTATGGTAGTTAATAACAATGCAGCAGCAGTTATGTTAGCTCTAAAT
ACCCTTTGTGAAGAAAGAGAAGCTATAGTATCAAGAGGTCAGCTAGTAGAGATAGGCGGATCTTTCAGGGTACCAGATGT
AATGAAGTTTAGTAGAGCTCATCTAGTTGAAGTAGGTACTACAAATAGAACACATTTATATGATTATGAAAATAATATAA
ATGAAAATACAGGAGTTTTACTTAAAGTCCATACTTCAAATTTTAAAATAATGGGTTTTACAGAAGAGGTATCTTCAGAA
GAAATGGTACAATTAGGTGGAAAATATAAATTACCTGTAATGGAGGACATAGGTAGTGGTACTTTGGTTGATTTTTCTAA
GTATGGATTTACTTATGAACCAACTGTTCAAAGTAGCCTTGAAAAGGGGGTAGATGTGGTAACATTTAGTGGAGATAAAA
TGTTAGGAGGACCACAAGCAGGAATAATAGTAGGTAAAAAGAAATACATAGATAAAATGAAAAAGAATCAATTAACTAGA
GCCTTAAGAATAGATAAAATGACTTTGGCGGCTTTAGAAGGAACTTTAAAATGCTATATAGACGAAAAAGAAGCTATAGA
AAATATTCCAACATTAAACATGATTTTAAGTTCCGAAGATATCCATAAAAAAAGAGCTCAAAGATTGAAAAGAAGACTTC
AAAATAATGTTAAAGACTTTAATTTTAAAGTATCAGAGGATCTTTCTATGGTAGGCGGAGGCTCTATGCCAGGGGAGAGA
ATACCTACCTATGTGGTAAAAGTGAATAGTGATAAAATAACAGCAGAAAAGATAGAAGAAAAATTAAGATTAAGTAAAAA
TCCTATAATAGTTAGAGTAAGCAAAGATGAAGTAATATTAGACGTGAGAACTTTGTTTGAGAGAGATTTTAATATAATAG
TAGAAGAATTTAAAAAATTATTAAAATAA

Upstream 100 bases:

>100_bases
AAGTAAACAAGATAAATATATAATAGTTGAATAAAATATTATACTATTTATGACAATAAGTATTGAATATACAACATAAT
TAAGGAATGGAGAATAGGGC

Downstream 100 bases:

>100_bases
TTGAGAATGGTGATGTTTATGAAGAACGTAATAATAGGAACAGCTGGACATATAGATCATGGTAAAACCACTTTAATAAA
AGCATTAACAGGAAGAGAAA

Product: selenocysteine synthase

Products: NA

Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK
VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN
TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE
EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR
ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER
IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK

Sequences:

>Translated_462_residues
MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK
VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN
TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE
EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR
ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER
IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK
>Mature_462_residues
MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKENVVNYFIDTLEENKSTKFKK
VINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALN
TLCEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE
EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR
ALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSEDIHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGER
IPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK

Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]

COG id: COG1921

COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the selA family [H]

Homologues:

Organism=Escherichia coli, GI2367248, Length=448, Percent_Identity=42.6339285714286, Blast_Score=337, Evalue=8e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR018319
- InterPro:   IPR004534 [H]

Pfam domain/function: PF03841 SelA [H]

EC number: =2.9.1.1 [H]

Molecular weight: Translated: 52267; Mature: 52267

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKE
CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
NVVNYFIDTLEENKSTKFKKVINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDL
HHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEH
KEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALNTLCEEREAIVSRGQLVEIGG
HCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
SFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE
CCCCCHHHHHCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEHHHHCHH
EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQA
HHHHCCCCCCCCHHHHCCCCCEEEHHHCCCEECCHHHHHHHCCCEEEEECCCCCCCCCCC
GIIVGKKKYIDKMKKNQLTRALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSED
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEECCHH
IHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGERIPTYVVKVNSDKITAEKIEE
HHHHHHHHHHHHHHCCHHHCCEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
KLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK
HHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDKKQLLRNLPKIDELLKEEIVNGYLQENSRTLVVDSLRQSIDHYRGEILKNNIDSFTKE
CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
NVVNYFIDTLEENKSTKFKKVINATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDL
HHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEH
KEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALNTLCEEREAIVSRGQLVEIGG
HCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
SFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSE
CCCCCHHHHHCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEHHHHCHH
EMVQLGGKYKLPVMEDIGSGTLVDFSKYGFTYEPTVQSSLEKGVDVVTFSGDKMLGGPQA
HHHHCCCCCCCCHHHHCCCCCEEEHHHCCCEECCHHHHHHHCCCEEEEECCCCCCCCCCC
GIIVGKKKYIDKMKKNQLTRALRIDKMTLAALEGTLKCYIDEKEAIENIPTLNMILSSED
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEECCHH
IHKKRAQRLKRRLQNNVKDFNFKVSEDLSMVGGGSMPGERIPTYVVKVNSDKITAEKIEE
HHHHHHHHHHHHHHCCHHHCCEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
KLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFKKLLK
HHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA