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The map label for this gene is ytrA [H]

Identifier: 226950348

GI number: 226950348

Start: 3345921

End: 3346292

Strand: Reverse

Name: ytrA [H]

Synonym: CLM_3315

Alternate gene names: 226950348

Gene position: 3346292-3345921 (Counterclockwise)

Preceding gene: 226950350

Following gene: 226950347

Centisome position: 80.53

GC content: 29.84

Gene sequence:

>372_bases
ATGAAGATATTAATATCTAATGCTTCAGAGCAGCCTATATATGAACAAATCCTTTGCCAAATAAAAGCCGCTATAATACA
AGGAGAATTAAAAGAAGGGGAGATACTTCCATCTATAAGGAATCTAGCTAAGGAAGTTGGAGTAAGTGTTATAACTACAA
AAAGGGCTTATGAAGAGCTTGAAAAGGAAGGCTTCGTAGAAACGGTAAAAGGGAAAGGAACTTTTGTAGCTGCTCAAAAT
AAGGAGCTTTTAAGAGAAAAGAAAATAAAAATTATAGAAGAAAAATTAAATGAAGTTATAGAAGACAGTAAATTATTGGA
CATATCTTATGAGGAAATTTTAGAGATACTTAAAATATTATATTTTCAATAA

Upstream 100 bases:

>100_bases
AATTTTATTACAGTATTTATGAGTAAAGGTTGACAAAAAAACACATACTGTATATATTATATATATACAGTATGTACGAT
ATAAGGTAAGGTGTTTATAA

Downstream 100 bases:

>100_bases
AATATTTATCTATGTAATTAGCAGCGCTTAGAGTGCCTTTTATAGAAAAATAGATAACCCAAATTTTAATCTAGAAATCT
AAATCTATGATTTAAAGTAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKILISNASEQPIYEQILCQIKAAIIQGELKEGEILPSIRNLAKEVGVSVITTKRAYEELEKEGFVETVKGKGTFVAAQN
KELLREKKIKIIEEKLNEVIEDSKLLDISYEEILEILKILYFQ

Sequences:

>Translated_123_residues
MKILISNASEQPIYEQILCQIKAAIIQGELKEGEILPSIRNLAKEVGVSVITTKRAYEELEKEGFVETVKGKGTFVAAQN
KELLREKKIKIIEEKLNEVIEDSKLLDISYEEILEILKILYFQ
>Mature_123_residues
MKILISNASEQPIYEQILCQIKAAIIQGELKEGEILPSIRNLAKEVGVSVITTKRAYEELEKEGFVETVKGKGTFVAAQN
KELLREKKIKIIEEKLNEVIEDSKLLDISYEEILEILKILYFQ

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14052; Mature: 14052

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILISNASEQPIYEQILCQIKAAIIQGELKEGEILPSIRNLAKEVGVSVITTKRAYEEL
CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EKEGFVETVKGKGTFVAAQNKELLREKKIKIIEEKLNEVIEDSKLLDISYEEILEILKIL
HHCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHH
YFQ
HCC
>Mature Secondary Structure
MKILISNASEQPIYEQILCQIKAAIIQGELKEGEILPSIRNLAKEVGVSVITTKRAYEEL
CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EKEGFVETVKGKGTFVAAQNKELLREKKIKIIEEKLNEVIEDSKLLDISYEEILEILKIL
HHCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHH
YFQ
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]