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The map label for this gene is glcT [H]

Identifier: 226950245

GI number: 226950245

Start: 3222582

End: 3223439

Strand: Direct

Name: glcT [H]

Synonym: CLM_3200

Alternate gene names: 226950245

Gene position: 3222582-3223439 (Clockwise)

Preceding gene: 226950240

Following gene: 226950247

Centisome position: 77.55

GC content: 25.41

Gene sequence:

>858_bases
ATGAATAATTTACAAGACAATTGCTATCAGGTTATAAAAGTATTTAATAATAATGTTTTACTAGTACATGAAAATAAGGA
AGAAAAAATTCTTTTTAGTAAAGGTATTGGTTTTGGAAAACATCCAGGAGATAATATTCCTTTTGATATAAAAATTGATA
AAATATTCACTATACAAAATGAAAATAATTTTAATAACTTTAAATTTTTAATGTCAAATGTAGATAGTGATATTATAGGT
TTATGTGAAGAAGTGATTTTAATGATTTCTGACGAACTAAATGAGCCTTTAAATGAAAAAATACATGTATCTTTAACTGA
CCATATATCTTACACTATAAAACGACTTATAGAAAATAATTCTATAGAAAATCCCTTTTTAGTAGAAACAGAGACCTTAT
ATAAAAGAGAATTTGCTATAGCAAAAAAAGCAGTGAGGATGTTAGAAGATAGACTTAATCTAGTTATTCCTGATGAAGAA
GCAGGTTTTATCACTTTACACATTCATTCTGCAAGAAACGAAGGTAAACTATCTAATACTATAAAATACGCTTTTCTTTC
TAACACCATCATAGAGTTCCTTGAAGACGAACTTAACATGGAAATAGATAAAAGTTCTTTAGACTACGCCCGCTTTTTAA
CTCATATAAGATTTGCAATAGAAAGAATTTTAAACAATACACCAATAAAAAATGAACTTTTAACTGCTATAAAAAATCAA
TATAAAATTTCATATAAATTAGCTAAAAAAGTAAGCAAAATAATAGAAGATGAACTTTCCGTAAATGTATCCAAAGAAGA
AACAGCTTACATTGCTATTCACATAGAAAAATTGAGAAGTTTTCCTACTAAAAATTAA

Upstream 100 bases:

>100_bases
ACCAATTTCCCTTGAAAAATATTTTATTTGATTTTATACTATATTATAAAGAGAGTTTTTATAATATAGTATAAAATTTA
TATATTTCGGGGGAATTGTA

Downstream 100 bases:

>100_bases
AAATCTAATTAGTTTTTTCATATGAATAATTACTACACTACTGTAAAGCTTAATCTTTAATAAATTGTCATTTTCACATA
ATTTAAGAAACCCTTAATAC

Product: transcriptional antiterminator, BglG family

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNNLQDNCYQVIKVFNNNVLLVHENKEEKILFSKGIGFGKHPGDNIPFDIKIDKIFTIQNENNFNNFKFLMSNVDSDIIG
LCEEVILMISDELNEPLNEKIHVSLTDHISYTIKRLIENNSIENPFLVETETLYKREFAIAKKAVRMLEDRLNLVIPDEE
AGFITLHIHSARNEGKLSNTIKYAFLSNTIIEFLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIKNELLTAIKNQ
YKISYKLAKKVSKIIEDELSVNVSKEETAYIAIHIEKLRSFPTKN

Sequences:

>Translated_285_residues
MNNLQDNCYQVIKVFNNNVLLVHENKEEKILFSKGIGFGKHPGDNIPFDIKIDKIFTIQNENNFNNFKFLMSNVDSDIIG
LCEEVILMISDELNEPLNEKIHVSLTDHISYTIKRLIENNSIENPFLVETETLYKREFAIAKKAVRMLEDRLNLVIPDEE
AGFITLHIHSARNEGKLSNTIKYAFLSNTIIEFLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIKNELLTAIKNQ
YKISYKLAKKVSKIIEDELSVNVSKEETAYIAIHIEKLRSFPTKN
>Mature_285_residues
MNNLQDNCYQVIKVFNNNVLLVHENKEEKILFSKGIGFGKHPGDNIPFDIKIDKIFTIQNENNFNNFKFLMSNVDSDIIG
LCEEVILMISDELNEPLNEKIHVSLTDHISYTIKRLIENNSIENPFLVETETLYKREFAIAKKAVRMLEDRLNLVIPDEE
AGFITLHIHSARNEGKLSNTIKYAFLSNTIIEFLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIKNELLTAIKNQ
YKISYKLAKKVSKIIEDELSVNVSKEETAYIAIHIEKLRSFPTKN

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=28.4671532846715, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 33038; Mature: 33038

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLQDNCYQVIKVFNNNVLLVHENKEEKILFSKGIGFGKHPGDNIPFDIKIDKIFTIQN
CCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC
ENNFNNFKFLMSNVDSDIIGLCEEVILMISDELNEPLNEKIHVSLTDHISYTIKRLIENN
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCC
SIENPFLVETETLYKREFAIAKKAVRMLEDRLNLVIPDEEAGFITLHIHSARNEGKLSNT
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEEECCCCCCCHHHH
IKYAFLSNTIIEFLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIKNELLTAIKNQ
HHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YKISYKLAKKVSKIIEDELSVNVSKEETAYIAIHIEKLRSFPTKN
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCCCCC
>Mature Secondary Structure
MNNLQDNCYQVIKVFNNNVLLVHENKEEKILFSKGIGFGKHPGDNIPFDIKIDKIFTIQN
CCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC
ENNFNNFKFLMSNVDSDIIGLCEEVILMISDELNEPLNEKIHVSLTDHISYTIKRLIENN
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCC
SIENPFLVETETLYKREFAIAKKAVRMLEDRLNLVIPDEEAGFITLHIHSARNEGKLSNT
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEEECCCCCCCHHHH
IKYAFLSNTIIEFLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIKNELLTAIKNQ
HHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YKISYKLAKKVSKIIEDELSVNVSKEETAYIAIHIEKLRSFPTKN
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]