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The map label for this gene is yvoA [H]

Identifier: 226950244

GI number: 226950244

Start: 3221553

End: 3222287

Strand: Reverse

Name: yvoA [H]

Synonym: CLM_3199

Alternate gene names: 226950244

Gene position: 3222287-3221553 (Counterclockwise)

Preceding gene: 226950246

Following gene: 226950243

Centisome position: 77.55

GC content: 27.89

Gene sequence:

>735_bases
ATGATGAAAATTGTTTCTAAAAAAAATCCAATACCTCTTCATTATCAAATTAAAGAGATATTACAAGAGATGATAGAAAA
TGAAGAATTAAAACCTGGAGATGCTGTACCTACAGAAAGAGAACTTTGTGAAATTCAAGGTGTTAGTAGAATGACAGTGA
ATAAGGCCATAATGTCTTTAGTTAACGAGGGATTATTATATAGAGAACAAGGGAAAGGAACTTTTGTTGCTAAACCTAAA
GAAAATAAAGAAATAGCTGGTTTAAAAAGTTTTAGTGAGATAATGCAAGATAAGGGATTAAAAACAGAAACAAGAATTTT
ATTTTTTCACATAAAGGAGGCTACAAAGAAAATAAAATCTGTTTTAAATTTATCAGATGATAATAACAAAGTTATTGAAA
TAAGTAGGCTTAGAATGTGTGAAGGTGAACCAGTGGCTATAGAAACTGTATGGATACCACATAATTTATGTAGTGATATG
GAAAGACAAACCATAGAAGGAAAATCCCTGTACGAAACATTTAAAAACAAATATAATTATTTTCCTGAAAAAGCAAAGCA
AACTATAGAACCTATAATTTTAAATGAATATGAATGTAAGCTTTTAAATCAAAATGAAAATGCTTTAGCCTTAATGTTTA
GAAGAACTACTTATATAAAAGGTGAAATTCCAATAGAGTACACAAAAGCAATTTATAGAAGTGATATATATAAGTATGAG
TTGGTTTTCCAGTAA

Upstream 100 bases:

>100_bases
TAAAATATTTATTTTAATTTAGAAATAAAGCAAAAACTATTATATAAATAGAAAAAGTAATATGATACAGGTTTAGATGA
ACAAAGAAGGGATCAGTGAT

Downstream 100 bases:

>100_bases
TGGATTAATATTTATTAAAGTTAGGTATTACTATCATGATTAATCTTAGAAAAATTTATTCTAATATCATAGATAATGTT
AAAGATATAAGTAATAAGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MMKIVSKKNPIPLHYQIKEILQEMIENEELKPGDAVPTERELCEIQGVSRMTVNKAIMSLVNEGLLYREQGKGTFVAKPK
ENKEIAGLKSFSEIMQDKGLKTETRILFFHIKEATKKIKSVLNLSDDNNKVIEISRLRMCEGEPVAIETVWIPHNLCSDM
ERQTIEGKSLYETFKNKYNYFPEKAKQTIEPIILNEYECKLLNQNENALALMFRRTTYIKGEIPIEYTKAIYRSDIYKYE
LVFQ

Sequences:

>Translated_244_residues
MMKIVSKKNPIPLHYQIKEILQEMIENEELKPGDAVPTERELCEIQGVSRMTVNKAIMSLVNEGLLYREQGKGTFVAKPK
ENKEIAGLKSFSEIMQDKGLKTETRILFFHIKEATKKIKSVLNLSDDNNKVIEISRLRMCEGEPVAIETVWIPHNLCSDM
ERQTIEGKSLYETFKNKYNYFPEKAKQTIEPIILNEYECKLLNQNENALALMFRRTTYIKGEIPIEYTKAIYRSDIYKYE
LVFQ
>Mature_244_residues
MMKIVSKKNPIPLHYQIKEILQEMIENEELKPGDAVPTERELCEIQGVSRMTVNKAIMSLVNEGLLYREQGKGTFVAKPK
ENKEIAGLKSFSEIMQDKGLKTETRILFFHIKEATKKIKSVLNLSDDNNKVIEISRLRMCEGEPVAIETVWIPHNLCSDM
ERQTIEGKSLYETFKNKYNYFPEKAKQTIEPIILNEYECKLLNQNENALALMFRRTTYIKGEIPIEYTKAIYRSDIYKYE
LVFQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=32.0512820512821, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082252, Length=190, Percent_Identity=28.9473684210526, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=25.3164556962025, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790118, Length=151, Percent_Identity=30.4635761589404, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28454; Mature: 28454

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIVSKKNPIPLHYQIKEILQEMIENEELKPGDAVPTERELCEIQGVSRMTVNKAIMSL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
VNEGLLYREQGKGTFVAKPKENKEIAGLKSFSEIMQDKGLKTETRILFFHIKEATKKIKS
HHCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHH
VLNLSDDNNKVIEISRLRMCEGEPVAIETVWIPHNLCSDMERQTIEGKSLYETFKNKYNY
HHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCC
FPEKAKQTIEPIILNEYECKLLNQNENALALMFRRTTYIKGEIPIEYTKAIYRSDIYKYE
CHHHHHHHHCCCEECCEEEEEECCCCCEEEEEEEHHEEEECCCCHHHHHHHHHCCCEEEE
LVFQ
EEEC
>Mature Secondary Structure
MMKIVSKKNPIPLHYQIKEILQEMIENEELKPGDAVPTERELCEIQGVSRMTVNKAIMSL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
VNEGLLYREQGKGTFVAKPKENKEIAGLKSFSEIMQDKGLKTETRILFFHIKEATKKIKS
HHCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHH
VLNLSDDNNKVIEISRLRMCEGEPVAIETVWIPHNLCSDMERQTIEGKSLYETFKNKYNY
HHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCC
FPEKAKQTIEPIILNEYECKLLNQNENALALMFRRTTYIKGEIPIEYTKAIYRSDIYKYE
CHHHHHHHHCCCEECCEEEEEECCCCCEEEEEEEHHEEEECCCCHHHHHHHHHCCCEEEE
LVFQ
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]