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The map label for this gene is gerAA [H]

Identifier: 226950209

GI number: 226950209

Start: 3175645

End: 3177141

Strand: Reverse

Name: gerAA [H]

Synonym: CLM_3163

Alternate gene names: 226950209

Gene position: 3177141-3175645 (Counterclockwise)

Preceding gene: 226950210

Following gene: 226950208

Centisome position: 76.46

GC content: 28.66

Gene sequence:

>1497_bases
ATGCGAGATATATTAGATGATAAAATAAAGCCTATTCTAGATAAACTTAATGCCCCAGATAAATTTAATGTAAAAAAAAT
AAATTTAGGAAAAGGTAATAATATAAAAATAGCATTAGTTTATGATAAAGATTTAATAGATAGAAATATAATAAGTGATT
ACATATTAAAACCATTAATGCTTCATGTGGAGGAAAGTTTTACAGGTAAAGAAAATATTACAGAAATTTTAATGGAAAAA
TATATATGTGTAGATGATACTATTTTAAAAACAGATACTTATGAGATAACAGATCTTATAAAAAAAGGATTTACAGCAGT
TTTTGTTCCTAATAGTAAAAATACCATAATTATTAATACTGTTAAAAAAAGTTACAAATCTATAATTCCGCCGGAGATAG
AGAGTTCCATAAGAGGCCCTAAAGAAGCTTTTACAGAAAGTATAGAGAGTAATTTATCACAAATTAACAGAAGAATAAAG
GATAAAAACTTAAGAATTGAGAGGTTTATAGTAGGAGAAAGATCACAAACAGAGGTAGCAATTATATATATAGAAGATAT
AGCAGATGAGAAATTAGTAAATAAAATAAAAGAAAGAGTAAATCTAATAAAAGTAGATCATGTAAAAAACGCAGGATATG
TAGAGGAATATATAGAAAATAATTCTTATACTGTATTTCCACAGTCTTTTACTACAGAAAGACCAGATGTAATGGCAGTT
AATATTATGGAGGGAAGAATAGGTATATTAATGGAAGGATCTCAGCAAGGGATAACTGTACCAGCTATTTTTATAGAATT
TTTTCAAACTGTAGAAGATTACAATGCAAAATTTATGTTATCAACAGTTATAAGATTTTTTAGAGTAATAGCTGTAGTTT
TAGTGTTGAGTTTAACATCTATATATTTAACACTTGTAAAATTTAATGTAGAATTATTGCCAGATAAATTATTGCAACCC
ATTGTACAATCTAGAGTTGGTATTGCCTTAAGTCCTATAATGGAAATAGTTTCAATGGAACTTATAGTAGAGTTTTTAAG
AGAGGGTGGATTAAGATTACCATCAAAGATAGGGCAAACTCTAAGTGTGGTTGGTGGGATTATAATTGGAGATGCGGCTA
TAAAATCTCACCTTGTAAGTTCTACCACTCTTCTAGTAGTAGGTGTCTCTACAGTGGCTACCTTTTTAATTCCAAATTAC
GAAATGTCATTGGCTATTAGGATTATAAAATTTCCCATATTGTTTCTTACCAATGCTTTGGGATTAATGGGAGTTTCAAT
AGGATGGTTCTTTATAGTGGTTGAATTATGTTCTTTAGATAGTATGGGGGTACCATATCTTCAGTTCAAAAAATCTGATA
TGAAGGACACATTTATAAGAGCACCTTTATGGAAAATGAATAAAAGACCAAAGGCTATACCAAATAAAAATCCTGTACGT
CAAAAGGATTTTAGGAAAAAATTTAGGGGGAAGCATAATGGAAAACAAGAGGAATAA

Upstream 100 bases:

>100_bases
ATAAGTAGATATTTTATAAATAATACAATTAAATTTAGAAATATTGCACATAATATATGATAAGTATATTAATTATAAAT
CATATAAGAAAGGATAAAAA

Downstream 100 bases:

>100_bases
TGTTTTAAGTACAAGTCAAACTATGGTTATTATAGCGGGATCTATGATAGGGATAGGGATATTATCTCTTCCAGCTAATT
TAACTAAGGTAGCTCATAAT

Product: spore germination protein, GerAA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MRDILDDKIKPILDKLNAPDKFNVKKINLGKGNNIKIALVYDKDLIDRNIISDYILKPLMLHVEESFTGKENITEILMEK
YICVDDTILKTDTYEITDLIKKGFTAVFVPNSKNTIIINTVKKSYKSIIPPEIESSIRGPKEAFTESIESNLSQINRRIK
DKNLRIERFIVGERSQTEVAIIYIEDIADEKLVNKIKERVNLIKVDHVKNAGYVEEYIENNSYTVFPQSFTTERPDVMAV
NIMEGRIGILMEGSQQGITVPAIFIEFFQTVEDYNAKFMLSTVIRFFRVIAVVLVLSLTSIYLTLVKFNVELLPDKLLQP
IVQSRVGIALSPIMEIVSMELIVEFLREGGLRLPSKIGQTLSVVGGIIIGDAAIKSHLVSSTTLLVVGVSTVATFLIPNY
EMSLAIRIIKFPILFLTNALGLMGVSIGWFFIVVELCSLDSMGVPYLQFKKSDMKDTFIRAPLWKMNKRPKAIPNKNPVR
QKDFRKKFRGKHNGKQEE

Sequences:

>Translated_498_residues
MRDILDDKIKPILDKLNAPDKFNVKKINLGKGNNIKIALVYDKDLIDRNIISDYILKPLMLHVEESFTGKENITEILMEK
YICVDDTILKTDTYEITDLIKKGFTAVFVPNSKNTIIINTVKKSYKSIIPPEIESSIRGPKEAFTESIESNLSQINRRIK
DKNLRIERFIVGERSQTEVAIIYIEDIADEKLVNKIKERVNLIKVDHVKNAGYVEEYIENNSYTVFPQSFTTERPDVMAV
NIMEGRIGILMEGSQQGITVPAIFIEFFQTVEDYNAKFMLSTVIRFFRVIAVVLVLSLTSIYLTLVKFNVELLPDKLLQP
IVQSRVGIALSPIMEIVSMELIVEFLREGGLRLPSKIGQTLSVVGGIIIGDAAIKSHLVSSTTLLVVGVSTVATFLIPNY
EMSLAIRIIKFPILFLTNALGLMGVSIGWFFIVVELCSLDSMGVPYLQFKKSDMKDTFIRAPLWKMNKRPKAIPNKNPVR
QKDFRKKFRGKHNGKQEE
>Mature_498_residues
MRDILDDKIKPILDKLNAPDKFNVKKINLGKGNNIKIALVYDKDLIDRNIISDYILKPLMLHVEESFTGKENITEILMEK
YICVDDTILKTDTYEITDLIKKGFTAVFVPNSKNTIIINTVKKSYKSIIPPEIESSIRGPKEAFTESIESNLSQINRRIK
DKNLRIERFIVGERSQTEVAIIYIEDIADEKLVNKIKERVNLIKVDHVKNAGYVEEYIENNSYTVFPQSFTTERPDVMAV
NIMEGRIGILMEGSQQGITVPAIFIEFFQTVEDYNAKFMLSTVIRFFRVIAVVLVLSLTSIYLTLVKFNVELLPDKLLQP
IVQSRVGIALSPIMEIVSMELIVEFLREGGLRLPSKIGQTLSVVGGIIIGDAAIKSHLVSSTTLLVVGVSTVATFLIPNY
EMSLAIRIIKFPILFLTNALGLMGVSIGWFFIVVELCSLDSMGVPYLQFKKSDMKDTFIRAPLWKMNKRPKAIPNKNPVR
QKDFRKKFRGKHNGKQEE

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56515; Mature: 56515

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDILDDKIKPILDKLNAPDKFNVKKINLGKGNNIKIALVYDKDLIDRNIISDYILKPLM
CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
LHVEESFTGKENITEILMEKYICVDDTILKTDTYEITDLIKKGFTAVFVPNSKNTIIINT
HHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHCCCEEEEECCCCCEEEEEE
VKKSYKSIIPPEIESSIRGPKEAFTESIESNLSQINRRIKDKNLRIERFIVGERSQTEVA
HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE
IIYIEDIADEKLVNKIKERVNLIKVDHVKNAGYVEEYIENNSYTVFPQSFTTERPDVMAV
EEEEECCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEE
NIMEGRIGILMEGSQQGITVPAIFIEFFQTVEDYNAKFMLSTVIRFFRVIAVVLVLSLTS
EEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYLTLVKFNVELLPDKLLQPIVQSRVGIALSPIMEIVSMELIVEFLREGGLRLPSKIGQT
HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSVVGGIIIGDAAIKSHLVSSTTLLVVGVSTVATFLIPNYEMSLAIRIIKFPILFLTNAL
HHHHHHHHCCHHHHHHHHHCCHHHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GLMGVSIGWFFIVVELCSLDSMGVPYLQFKKSDMKDTFIRAPLWKMNKRPKAIPNKNPVR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCC
QKDFRKKFRGKHNGKQEE
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRDILDDKIKPILDKLNAPDKFNVKKINLGKGNNIKIALVYDKDLIDRNIISDYILKPLM
CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
LHVEESFTGKENITEILMEKYICVDDTILKTDTYEITDLIKKGFTAVFVPNSKNTIIINT
HHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHCCCEEEEECCCCCEEEEEE
VKKSYKSIIPPEIESSIRGPKEAFTESIESNLSQINRRIKDKNLRIERFIVGERSQTEVA
HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE
IIYIEDIADEKLVNKIKERVNLIKVDHVKNAGYVEEYIENNSYTVFPQSFTTERPDVMAV
EEEEECCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEE
NIMEGRIGILMEGSQQGITVPAIFIEFFQTVEDYNAKFMLSTVIRFFRVIAVVLVLSLTS
EEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYLTLVKFNVELLPDKLLQPIVQSRVGIALSPIMEIVSMELIVEFLREGGLRLPSKIGQT
HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSVVGGIIIGDAAIKSHLVSSTTLLVVGVSTVATFLIPNYEMSLAIRIIKFPILFLTNAL
HHHHHHHHCCHHHHHHHHHCCHHHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GLMGVSIGWFFIVVELCSLDSMGVPYLQFKKSDMKDTFIRAPLWKMNKRPKAIPNKNPVR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCC
QKDFRKKFRGKHNGKQEE
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]