Click here to switch to the map view.

The map label for this gene is yndE [H]

Identifier: 226950208

GI number: 226950208

Start: 3174546

End: 3175664

Strand: Reverse

Name: yndE [H]

Synonym: CLM_3162

Alternate gene names: 226950208

Gene position: 3175664-3174546 (Counterclockwise)

Preceding gene: 226950209

Following gene: 226950207

Centisome position: 76.42

GC content: 24.58

Gene sequence:

>1119_bases
ATGGAAAACAAGAGGAATAATGTTTTAAGTACAAGTCAAACTATGGTTATTATAGCGGGATCTATGATAGGGATAGGGAT
ATTATCTCTTCCAGCTAATTTAACTAAGGTAGCTCATAATGATGGTTGGATAGGAGTAATTATAGGTAGCTTATACCCTT
TTTATATGATAATTTGTTCTTTCATAATATTTAAAGATAGTTCATACCAAAATATTAATATAGTGGAAATAAGTAAAATA
TATTTTGGAAAGTTTTTTGGAAACTTGTTAGGCTTTATATTTACTCTTCAATTTTTAGCTTATATAATCATTACCGCTGG
CAATATAAGCAATATGTTAAGAGTTTATTTAGTTTTATTTTTGGAGCAATATAAATTAGCAATTCCAATACTATTAATTT
CAGTATACACTGCTTCTAAAGGCATAAAGACCTTAGGAAGAATAAATGAGATTATTTTTTATGCATCCATTCCACTAATA
TTATTAACTGTAGTAGCATTAAAACAAGGAAATATATTAAATATAAAACCTATATTGGGGACTCCTATTTCCTCTATTTT
AAAAGCTAGTATAGAACCTGTATATTCTTTTGTAGGCATAGAGATTATTTTTTTAATAGTTCCCTTAATGAAAGATAAAA
CTAAGATAAAAAATTCCTTCTTAAAAGCCACTGGAATTATAGTTTTCTTATATATATGGTTAAGTTTTGTGTCTATATAT
TACTTAGGAGCAGATATAGCAAAAAATTTATATTGGCCTACTTTATCTCTTGCAGAAACAATTGCTATACCAGGCATAAG
CAATTTTAAATTTGTATTTATGTTTTTATGGAGTAGTATAATTTTTAAAACTATAGCAAATCAGAATTATTTTTTTTATT
ATTCACTGTCTAGCGTATTAAAAAAAATAGACCCAAATATTTTGTGTTTACTAGTATTTGTGTTTACTACTATAATTGTT
AGTAGATTAGATAGCTTTATACTTCTTAAAAAAATTAATAAAGGTATTAGTTTATTTTATTTAATCTTTAATTTGATTTT
CATAACTAGCATAACTATTATAACTCTTATAAAGAATGGAGGAAAAAATGAAAAAAATAATGAAAAAATTAAAGAATAA

Upstream 100 bases:

>100_bases
AGAGCACCTTTATGGAAAATGAATAAAAGACCAAAGGCTATACCAAATAAAAATCCTGTACGTCAAAAGGATTTTAGGAA
AAAATTTAGGGGGAAGCATA

Downstream 100 bases:

>100_bases
TAGAATTAATATAATTATTCTTATAATAATTATTTTAAATATATATTATTATGATCCTAATATAAAGTATGCAGAGGAAT
TAGATATACCCGCTGGGATA

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MENKRNNVLSTSQTMVIIAGSMIGIGILSLPANLTKVAHNDGWIGVIIGSLYPFYMIICSFIIFKDSSYQNINIVEISKI
YFGKFFGNLLGFIFTLQFLAYIIITAGNISNMLRVYLVLFLEQYKLAIPILLISVYTASKGIKTLGRINEIIFYASIPLI
LLTVVALKQGNILNIKPILGTPISSILKASIEPVYSFVGIEIIFLIVPLMKDKTKIKNSFLKATGIIVFLYIWLSFVSIY
YLGADIAKNLYWPTLSLAETIAIPGISNFKFVFMFLWSSIIFKTIANQNYFFYYSLSSVLKKIDPNILCLLVFVFTTIIV
SRLDSFILLKKINKGISLFYLIFNLIFITSITIITLIKNGGKNEKNNEKIKE

Sequences:

>Translated_372_residues
MENKRNNVLSTSQTMVIIAGSMIGIGILSLPANLTKVAHNDGWIGVIIGSLYPFYMIICSFIIFKDSSYQNINIVEISKI
YFGKFFGNLLGFIFTLQFLAYIIITAGNISNMLRVYLVLFLEQYKLAIPILLISVYTASKGIKTLGRINEIIFYASIPLI
LLTVVALKQGNILNIKPILGTPISSILKASIEPVYSFVGIEIIFLIVPLMKDKTKIKNSFLKATGIIVFLYIWLSFVSIY
YLGADIAKNLYWPTLSLAETIAIPGISNFKFVFMFLWSSIIFKTIANQNYFFYYSLSSVLKKIDPNILCLLVFVFTTIIV
SRLDSFILLKKINKGISLFYLIFNLIFITSITIITLIKNGGKNEKNNEKIKE
>Mature_372_residues
MENKRNNVLSTSQTMVIIAGSMIGIGILSLPANLTKVAHNDGWIGVIIGSLYPFYMIICSFIIFKDSSYQNINIVEISKI
YFGKFFGNLLGFIFTLQFLAYIIITAGNISNMLRVYLVLFLEQYKLAIPILLISVYTASKGIKTLGRINEIIFYASIPLI
LLTVVALKQGNILNIKPILGTPISSILKASIEPVYSFVGIEIIFLIVPLMKDKTKIKNSFLKATGIIVFLYIWLSFVSIY
YLGADIAKNLYWPTLSLAETIAIPGISNFKFVFMFLWSSIIFKTIANQNYFFYYSLSSVLKKIDPNILCLLVFVFTTIIV
SRLDSFILLKKINKGISLFYLIFNLIFITSITIITLIKNGGKNEKNNEKIKE

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 41969; Mature: 41969

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKRNNVLSTSQTMVIIAGSMIGIGILSLPANLTKVAHNDGWIGVIIGSLYPFYMIICS
CCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FIIFKDSSYQNINIVEISKIYFGKFFGNLLGFIFTLQFLAYIIITAGNISNMLRVYLVLF
HHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEQYKLAIPILLISVYTASKGIKTLGRINEIIFYASIPLILLTVVALKQGNILNIKPILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
TPISSILKASIEPVYSFVGIEIIFLIVPLMKDKTKIKNSFLKATGIIVFLYIWLSFVSIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLGADIAKNLYWPTLSLAETIAIPGISNFKFVFMFLWSSIIFKTIANQNYFFYYSLSSVL
HHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
KKIDPNILCLLVFVFTTIIVSRLDSFILLKKINKGISLFYLIFNLIFITSITIITLIKNG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GKNEKNNEKIKE
CCCCCCCCCCCC
>Mature Secondary Structure
MENKRNNVLSTSQTMVIIAGSMIGIGILSLPANLTKVAHNDGWIGVIIGSLYPFYMIICS
CCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FIIFKDSSYQNINIVEISKIYFGKFFGNLLGFIFTLQFLAYIIITAGNISNMLRVYLVLF
HHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEQYKLAIPILLISVYTASKGIKTLGRINEIIFYASIPLILLTVVALKQGNILNIKPILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
TPISSILKASIEPVYSFVGIEIIFLIVPLMKDKTKIKNSFLKATGIIVFLYIWLSFVSIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLGADIAKNLYWPTLSLAETIAIPGISNFKFVFMFLWSSIIFKTIANQNYFFYYSLSSVL
HHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
KKIDPNILCLLVFVFTTIIVSRLDSFILLKKINKGISLFYLIFNLIFITSITIITLIKNG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GKNEKNNEKIKE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]