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The map label for this gene is yfeT [C]

Identifier: 226949292

GI number: 226949292

Start: 2278660

End: 2279397

Strand: Reverse

Name: yfeT [C]

Synonym: CLM_2211

Alternate gene names: 226949292

Gene position: 2279397-2278660 (Counterclockwise)

Preceding gene: 226949293

Following gene: 226949291

Centisome position: 54.86

GC content: 27.24

Gene sequence:

>738_bases
ATGGTTATAGAAGTTAATAAAAGTATTTTTGATAGTCTTACTGAAACAGAGAAAACAGTAGTTAAATATATTAATTCAAA
TGAAAGCAACATACCTAAGATGTCTATAGTAGATGTAGCAGAAAAATCTTTTACTTCTCCAGCAACGGTTTCCAGAACTA
TTAAAAAATGCGGATTAGAAGGTTTTTCGGAATTAAGATACAAAATTTCAGCTAAAAATGACTATAATCATGATTCTAAA
AAAGTAAATGAAATACTGGGGAAATCTTTAATAGAAGTAACAAAAACTATAGAAAATATTTCTGTAGAAAATGTATTGAA
AACTGTTAGGCTAATAAAAGAGGCAAAACGTATATATATTTTAGCTAGGGGTCTTACAGAACTTGTGGCTCAAGAGTTTA
ATTTAAAATTAGAGTTGTTAGGATATAATACATTTTTAATAGTAGATCCTAATATTATGAGAAAAATATGCAAAACTTTA
GATAAAGAGGAACTGGTAATAGTTTTTTCACTGAAAATTGGTTCTCCTGAAATAGTAGAGTCAGCAGAAAGTGCAGTTAA
AACTGGGGCAAAATTAATTACTTGTTGTTGTGTTAAAAATAGTAAATTGGAAAACCTATCAGATATTACATTAATAGGCT
ACAAGCAGTCTAGAACCGCTATTAAAGAATTTGAAGTTACTTCAAGATTACCCTTATTTATTATATCAAGAGCTATTATA
GATTATTTAATAATTTAA

Upstream 100 bases:

>100_bases
AAAGAAGAAGGGCCATTAATATAAATACAACGAAAATTTTAAATGAATTTCCCTATTGGGTAAAATAACATCTAGCAATT
ATATGAATGGGGATGAAAAA

Downstream 100 bases:

>100_bases
AGTCTATATGAAAAGAGATTTTCAATATTGAAAATCTCTTTTTTGTATTTTCAGAGTTATTTTACATGACTCTAATATAG
ATAAATACAGGATTTCATTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPKMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENVLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII

Sequences:

>Translated_245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPKMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENVLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII
>Mature_245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPKMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENVLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=220, Percent_Identity=24.0909090909091, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 27560; Mature: 27560

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPKMSIVDVAEKSFTSPATVSRTIKKCGLE
CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
GFSELRYKISAKNDYNHDSKKVNEILGKSLIEVTKTIENISVENVLKTVRLIKEAKRIYI
CHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTLDKEELVIVFSLKIGSPEIVE
HHHHHHHHHHHHHCCEEEEEECEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
SAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
HHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHH
DYLII
HHHCC
>Mature Secondary Structure
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPKMSIVDVAEKSFTSPATVSRTIKKCGLE
CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
GFSELRYKISAKNDYNHDSKKVNEILGKSLIEVTKTIENISVENVLKTVRLIKEAKRIYI
CHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTLDKEELVIVFSLKIGSPEIVE
HHHHHHHHHHHHHCCEEEEEECEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
SAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
HHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHH
DYLII
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]