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The map label for this gene is yqxC [H]

Identifier: 226949178

GI number: 226949178

Start: 2154213

End: 2155034

Strand: Reverse

Name: yqxC [H]

Synonym: CLM_2097

Alternate gene names: 226949178

Gene position: 2155034-2154213 (Counterclockwise)

Preceding gene: 226949179

Following gene: 226949177

Centisome position: 51.86

GC content: 30.66

Gene sequence:

>822_bases
ATGGCAGAAAAAAAAGAAAGATTAGATTTGCTTTTGGTGGAAAAGGGGATTTTTCAGTCTAGAGAAAGAGCAAAAGCTAG
CATAATGGCAGGAGAAATATTTATAGATGGTAATAGAATTGATAAATGTGGAGAAAAGATAAAAGAAAGTGCTAATATAG
AATTTAGAGGAGAAAAATTACCCTATGTAAGTCGAGGAGGACTAAAATTAGAAAAGTCCATAAAAAATTTTGGAATAGAT
TTAAATGAAAAGGTATGTTTAGATATAGGAGCATCCACAGGAGGCTTTACAGATTGTATGCTTCAAAATGGAGCAAAAAA
AGTATTTTCCATAGATGTTGGATATGGACAATTTGCCTGGAAGCTTAGAGTGGACCCTAGAGTAGTCTGTATGGAAAGAA
CTAATGTAAGATATGTAACCTCAGAGGAACTAGGAGAAAAGGCTAATTTTGCAAGTATAGATGTATCCTTTATATCTTTA
ACTTTAGTAATACCTGTAGTAAAAGATTTGTTAGATGAAGATGGAGAAATAATGGCTCTTATAAAACCACAATTTGAAGC
AGGGAGAGAAAAAGTAGGTAAAAAGGGGGTAGTAAGGGAAAGTAGTACTCATAAAGAGGTAGTGAATAAAATAGTTCAGT
TTGCAGAAAAAATAGATTTAAATATATTAAATTTAGATTTTTCTCCAATAAAAGGTCCTGAGGGGAATATAGAATACCTT
ATATATATGACAAAAAATAAAGGGGTAAATAGTGATTTTCAAGATGACTATGTAGATTATATAGTAAATAAAGCTCATAA
TAATTTGAATGGTGATAAATAA

Upstream 100 bases:

>100_bases
TGGTAGTACAGATATATTATATAAAATAGAAGGATTAGATCCAGAGGGTATTGTTAAAAATATAATAAAGATTATATAAT
ATTATATGAAGGAGTTAGTT

Downstream 100 bases:

>100_bases
TGAAAAATATTGGTATAAATATAAATACAGATAAGGATATAAGTAGAAACATTTTAGACAAAATTTTTCAGTATATACAT
GAGGAATGTAGTGAAGCTAA

Product: putative hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAEKKERLDLLLVEKGIFQSRERAKASIMAGEIFIDGNRIDKCGEKIKESANIEFRGEKLPYVSRGGLKLEKSIKNFGID
LNEKVCLDIGASTGGFTDCMLQNGAKKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTSEELGEKANFASIDVSFISL
TLVIPVVKDLLDEDGEIMALIKPQFEAGREKVGKKGVVRESSTHKEVVNKIVQFAEKIDLNILNLDFSPIKGPEGNIEYL
IYMTKNKGVNSDFQDDYVDYIVNKAHNNLNGDK

Sequences:

>Translated_273_residues
MAEKKERLDLLLVEKGIFQSRERAKASIMAGEIFIDGNRIDKCGEKIKESANIEFRGEKLPYVSRGGLKLEKSIKNFGID
LNEKVCLDIGASTGGFTDCMLQNGAKKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTSEELGEKANFASIDVSFISL
TLVIPVVKDLLDEDGEIMALIKPQFEAGREKVGKKGVVRESSTHKEVVNKIVQFAEKIDLNILNLDFSPIKGPEGNIEYL
IYMTKNKGVNSDFQDDYVDYIVNKAHNNLNGDK
>Mature_272_residues
AEKKERLDLLLVEKGIFQSRERAKASIMAGEIFIDGNRIDKCGEKIKESANIEFRGEKLPYVSRGGLKLEKSIKNFGIDL
NEKVCLDIGASTGGFTDCMLQNGAKKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTSEELGEKANFASIDVSFISLT
LVIPVVKDLLDEDGEIMALIKPQFEAGREKVGKKGVVRESSTHKEVVNKIVQFAEKIDLNILNLDFSPIKGPEGNIEYLI
YMTKNKGVNSDFQDDYVDYIVNKAHNNLNGDK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30596; Mature: 30464

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKKERLDLLLVEKGIFQSRERAKASIMAGEIFIDGNRIDKCGEKIKESANIEFRGEKL
CCCCHHHHCEEEEHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHCCCEEECCCCC
PYVSRGGLKLEKSIKNFGIDLNEKVCLDIGASTGGFTDCMLQNGAKKVFSIDVGYGQFAW
CEECCCCEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KLRVDPRVVCMERTNVRYVTSEELGEKANFASIDVSFISLTLVIPVVKDLLDEDGEIMAL
EEECCCEEEEEECCCEEEEEHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEE
IKPQFEAGREKVGKKGVVRESSTHKEVVNKIVQFAEKIDLNILNLDFSPIKGPEGNIEYL
ECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEE
IYMTKNKGVNSDFQDDYVDYIVNKAHNNLNGDK
EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AEKKERLDLLLVEKGIFQSRERAKASIMAGEIFIDGNRIDKCGEKIKESANIEFRGEKL
CCCHHHHCEEEEHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHCCCEEECCCCC
PYVSRGGLKLEKSIKNFGIDLNEKVCLDIGASTGGFTDCMLQNGAKKVFSIDVGYGQFAW
CEECCCCEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KLRVDPRVVCMERTNVRYVTSEELGEKANFASIDVSFISLTLVIPVVKDLLDEDGEIMAL
EEECCCEEEEEECCCEEEEEHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEE
IKPQFEAGREKVGKKGVVRESSTHKEVVNKIVQFAEKIDLNILNLDFSPIKGPEGNIEYL
ECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEE
IYMTKNKGVNSDFQDDYVDYIVNKAHNNLNGDK
EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]