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The map label for this gene is ymfN [H]

Identifier: 226949140

GI number: 226949140

Start: 2120338

End: 2122056

Strand: Reverse

Name: ymfN [H]

Synonym: CLM_2058

Alternate gene names: 226949140

Gene position: 2122056-2120338 (Counterclockwise)

Preceding gene: 226949141

Following gene: 226949139

Centisome position: 51.07

GC content: 28.04

Gene sequence:

>1719_bases
ATGTTTAAAGACCGAGTTACCCAATATTGTTATGATGTATTAAATAATAAATTAATTGCTGGTAAATCTGTTAAATTAGC
TTGTCAAAGACATTTAGAAGATTTAGAAAAAAGTAAATTAGCACCTTACAAATATAAATTTGATGTAAATAAAGCCAATG
CAATTATCGATTTTGCTAATAGTTTAACTATTGCAGAAGGTGAAGAAGAAGTAAATTTAACTTGTTATCAATTTCAAGAG
TTTATATTGGGTTCTTTAATTGGTTGGGTAACTAAAGATAAAGAATACAGAAGATTTAGAAGTAGTTATATACAATTAGG
AAGGCAAAACGGTAAATCTTTTTTGAATGGTATTTTAGGTACATATTTAGGTAATTTTAGTGGGTATAAATATGGGAAAA
TATTTTGTGTAGCAACTAAACACGACCAAGCAAAAATTGTTTGGGATGAAATGAATAAGTTTATACAGAGCGATGATGAT
TTAGGTGAATTATTTACCGTACAAGAATATAAATCTACTATTATATGTAATCTAACTAATACTGTAATTAAAGCATTGGG
TAGGGATACAAAAGGGCTTGATGGATTAAGACCTTTACTAACCGTAATAGATGAGTATCACGCTCACAAAGATAATCAAA
TGTACAAGTTAATGGAAGGTGGACAAAAGAAAATAAAGCAAAGCTTAATTTCGGTAATAACTACAGCAGGATTTGAATTA
GAATCTCCTTGCCATAAAATGTACAAATATTGTAAACAGATATTGGAAGGTACTGAAAAAAATGAAAGCAAATTTATATA
TATTGCTGAAATGGATGAAGAGGATGATTTGAATAATTACCAAAATTGGATAAAAGCTAATCCTATGCTTCAATATGATA
GAGAGGCATTAGAAAATTTAATACCAGTTTATAAAAGTGCTAAAGCAATAGGTAGTAAGGATTGGAACGATTTTCTTACT
AAACAATTAAATATGTGGGTTGAATTTACAGAAACAAAATATATGAATATGACAGCATGGAATAAGTGTGCTAGTAATAA
AACTTTAGAAGATTTTAGAGGACAAGAATTTATTTTAGGAATAGATTTAAGTAGTGGTGGAGATTTAACGAGTATTTGTT
TTGAATTTACTTGGTTCAATACTAAAAATGAAAAGTGCTATTTTGTACATCATCATTCTTTTATACCTAAAAATAGAGTA
AGTGAACATGAAAAAACTGATAATGCTCCATATAAATCATGGATTGAAAAAAAAATATTAACAGTTACTACAGCAAGTTA
TGGTATTAAAACAGATTACAAAGAAGTTTTAAAGTATATTGAAGAAAAAATTAATGAATATGATTTAAAATTAACTTTAA
TTTGTTATGATGAGCACAATGCAAGTGCATTTTTAGCTGATTTAGATGAATTTGGAGTAGATTGTTTAAATATTTTTCAA
AATTCTAAAAGCCTAAATGATAGTGTTATGGATATTCGATACAGTGTAGAAGGTGGAAATATAGAATATAATAAAAATGA
TGAGCTATTAGCATGGGCTATGAATAACTGTGAATTGACACCACCACGACAAGGGTATGTAATGCTAGATAAAAATAGCA
GATTTAAGAGAATTGATCCAGTAGCTTGTTGGGTAGATGCACACAAATTTAGTATGAGAAATGAAAAACCTAAACCTAAT
TTAAATGAACTTATTAAGAAGGGAGAGTGGACACTATAG

Upstream 100 bases:

>100_bases
GCAACTGATTTAGGATTAACTATTTCTAGTAGATGTAAGTTGGTAATACCAAAAAAAGAAGAAAAACCAAAGAATAAATT
TGAGAAATTTGGTGTTAAAG

Downstream 100 bases:

>100_bases
GAAAAATAATTAAACAATATTTAATGATACTAGTTACGTTTATAATGAAAAATATAGATGATATATTGATTTTAGGAGGA
TGTAGTGTATTAACTACAGC

Product: putative phage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MFKDRVTQYCYDVLNNKLIAGKSVKLACQRHLEDLEKSKLAPYKYKFDVNKANAIIDFANSLTIAEGEEEVNLTCYQFQE
FILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFCVATKHDQAKIVWDEMNKFIQSDDD
LGELFTVQEYKSTIICNLTNTVIKALGRDTKGLDGLRPLLTVIDEYHAHKDNQMYKLMEGGQKKIKQSLISVITTAGFEL
ESPCHKMYKYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKAIGSKDWNDFLT
KQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLSSGGDLTSICFEFTWFNTKNEKCYFVHHHSFIPKNRV
SEHEKTDNAPYKSWIEKKILTVTTASYGIKTDYKEVLKYIEEKINEYDLKLTLICYDEHNASAFLADLDEFGVDCLNIFQ
NSKSLNDSVMDIRYSVEGGNIEYNKNDELLAWAMNNCELTPPRQGYVMLDKNSRFKRIDPVACWVDAHKFSMRNEKPKPN
LNELIKKGEWTL

Sequences:

>Translated_572_residues
MFKDRVTQYCYDVLNNKLIAGKSVKLACQRHLEDLEKSKLAPYKYKFDVNKANAIIDFANSLTIAEGEEEVNLTCYQFQE
FILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFCVATKHDQAKIVWDEMNKFIQSDDD
LGELFTVQEYKSTIICNLTNTVIKALGRDTKGLDGLRPLLTVIDEYHAHKDNQMYKLMEGGQKKIKQSLISVITTAGFEL
ESPCHKMYKYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKAIGSKDWNDFLT
KQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLSSGGDLTSICFEFTWFNTKNEKCYFVHHHSFIPKNRV
SEHEKTDNAPYKSWIEKKILTVTTASYGIKTDYKEVLKYIEEKINEYDLKLTLICYDEHNASAFLADLDEFGVDCLNIFQ
NSKSLNDSVMDIRYSVEGGNIEYNKNDELLAWAMNNCELTPPRQGYVMLDKNSRFKRIDPVACWVDAHKFSMRNEKPKPN
LNELIKKGEWTL
>Mature_572_residues
MFKDRVTQYCYDVLNNKLIAGKSVKLACQRHLEDLEKSKLAPYKYKFDVNKANAIIDFANSLTIAEGEEEVNLTCYQFQE
FILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFCVATKHDQAKIVWDEMNKFIQSDDD
LGELFTVQEYKSTIICNLTNTVIKALGRDTKGLDGLRPLLTVIDEYHAHKDNQMYKLMEGGQKKIKQSLISVITTAGFEL
ESPCHKMYKYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKAIGSKDWNDFLT
KQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLSSGGDLTSICFEFTWFNTKNEKCYFVHHHSFIPKNRV
SEHEKTDNAPYKSWIEKKILTVTTASYGIKTDYKEVLKYIEEKINEYDLKLTLICYDEHNASAFLADLDEFGVDCLNIFQ
NSKSLNDSVMDIRYSVEGGNIEYNKNDELLAWAMNNCELTPPRQGYVMLDKNSRFKRIDPVACWVDAHKFSMRNEKPKPN
LNELIKKGEWTL

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 66459; Mature: 66459

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKDRVTQYCYDVLNNKLIAGKSVKLACQRHLEDLEKSKLAPYKYKFDVNKANAIIDFAN
CCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCC
SLTIAEGEEEVNLTCYQFQEFILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILG
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
TYLGNFSGYKYGKIFCVATKHDQAKIVWDEMNKFIQSDDDLGELFTVQEYKSTIICNLTN
HHHCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHCCCCCHHHHEEHHHHCCEEEEEHHH
TVIKALGRDTKGLDGLRPLLTVIDEYHAHKDNQMYKLMEGGQKKIKQSLISVITTAGFEL
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCC
ESPCHKMYKYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENL
CCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IPVYKSAKAIGSKDWNDFLTKQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILG
HHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCEEECCHHHHHHCCCCCHHHCCCCEEEEE
IDLSSGGDLTSICFEFTWFNTKNEKCYFVHHHSFIPKNRVSEHEKTDNAPYKSWIEKKIL
EEECCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCCHHCCHHHCCCCCHHHHHHHHHHE
TVTTASYGIKTDYKEVLKYIEEKINEYDLKLTLICYDEHNASAFLADLDEFGVDCLNIFQ
EEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCHHHHHHHH
NSKSLNDSVMDIRYSVEGGNIEYNKNDELLAWAMNNCELTPPRQGYVMLDKNSRFKRIDP
CCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCC
VACWVDAHKFSMRNEKPKPNLNELIKKGEWTL
EEEEEEHHHHHCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MFKDRVTQYCYDVLNNKLIAGKSVKLACQRHLEDLEKSKLAPYKYKFDVNKANAIIDFAN
CCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCC
SLTIAEGEEEVNLTCYQFQEFILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILG
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
TYLGNFSGYKYGKIFCVATKHDQAKIVWDEMNKFIQSDDDLGELFTVQEYKSTIICNLTN
HHHCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHCCCCCHHHHEEHHHHCCEEEEEHHH
TVIKALGRDTKGLDGLRPLLTVIDEYHAHKDNQMYKLMEGGQKKIKQSLISVITTAGFEL
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCC
ESPCHKMYKYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENL
CCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IPVYKSAKAIGSKDWNDFLTKQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILG
HHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCEEECCHHHHHHCCCCCHHHCCCCEEEEE
IDLSSGGDLTSICFEFTWFNTKNEKCYFVHHHSFIPKNRVSEHEKTDNAPYKSWIEKKIL
EEECCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCCHHCCHHHCCCCCHHHHHHHHHHE
TVTTASYGIKTDYKEVLKYIEEKINEYDLKLTLICYDEHNASAFLADLDEFGVDCLNIFQ
EEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCHHHHHHHH
NSKSLNDSVMDIRYSVEGGNIEYNKNDELLAWAMNNCELTPPRQGYVMLDKNSRFKRIDP
CCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCC
VACWVDAHKFSMRNEKPKPNLNELIKKGEWTL
EEEEEEHHHHHCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]