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The map label for this gene is ydiP [C]

Identifier: 226948865

GI number: 226948865

Start: 1805998

End: 1807215

Strand: Direct

Name: ydiP [C]

Synonym: CLM_1767

Alternate gene names: 226948865

Gene position: 1805998-1807215 (Clockwise)

Preceding gene: 226948864

Following gene: 226948866

Centisome position: 43.46

GC content: 32.1

Gene sequence:

>1218_bases
TTGTTAAAAGAGATAAGGGGCTTAGAAGGTATGAAAAGGAAAAAAATACTAGAAAATCTGAAATCACAAATAAAGAAAGG
AAATCATATTATTGGCGTAGCCACAGGAACAGGAATGACAGCAAAGTATGCCAAAAAGGGTGGAGCAGATTTTCTTCTCA
TGTTGAACTCAGGTAGATTTCGTCAAATGGGAAGAAGTTCATTAGCAGGGTTTTTACCCTTTTATAATAGTAATGATATG
GTAATGGAATTTGCTTATAGAGAGATAATACCTTTGGTAAGGGACATGCCTATAATTTTTGGGTTTAATGCAACGGATCC
CACAAAGGATATGGAAAGCTATATAGATGAAATAAAAAGCAAGGGATTTTCTGGTATTAATAATTACCCAACAGTTGGAT
TAATAGATGGTGAGTTTAGTAAAGCTCTTGAAGAGAAGGAATGCCATTATCTAATTGAAGTGGAAGCAATAAGAATAGCC
CACCAAAAAGATATGTTTACCGTTGCATTCGTATTTAATGATATGCAAGCAGCTCAAATGATTGAAGCTGGAGCAGATGT
AATTTGTGTGCATTTAGGCTTAACAGGAGGAGGGCTATTAGGAGCAAAGAAAGTTTTATCACTGGAAGCTGCAAAGATTA
AAGCAGAAAAAATATTTAAAAAATGTGATGAATTAAATCCAGATGTAATTAAGTTAATTTATGGAGGCTCTGTGAAAACT
CCAACGGACGTTCAGTATATGTACAGTGATAATGAAAATTTAATGGGCTATATAGGTGGATCTGCTTTTGAAAGAATCCC
TTCTGAAAAATTTATTACAAATATAACGAAGGCTTTTAAAGTATCTTCACAATTAGATGAAGATGATTTAATGGTTAAAA
TGTTAGATGGAATTACAAAGCATTATGATTATGTTGAGTTTGTTAAAGAATATGTTACTAAAAATTATATGCGTGAAATT
TCCTTTTCAGATTTGGCCAAGGTGGCTCATGTATCTAGGAGTTACCTAAGTACTTTGTTTAAAAAAGAGATAGGCTGTAG
TTTTCGAGAGTATTTAGTTAAATTTAGAATGGATAAAGCAGCAGAAATACTAGATAAAAAAAATATTCAGTTATCAGAGC
TATCATCTTTAGTTGGATATGAAGATTATGCCCAGTTTAGCAAAATGTTTAAAAAGTATAAAGGCTGTTCTCCGAAACAA
TATAAAAATATAACATAA

Upstream 100 bases:

>100_bases
TAGTTGGTTATGCAGGTGGACTAGATGTAAAAGAGAAACTTTTAAAAATAGAAAAAGAGAACTCAAAAGGGTAAAACAAA
ACCACCCAAAACATACTGAA

Downstream 100 bases:

>100_bases
ACACAAAAACACCTAATGTAATAACGTTTACACTAAAAAGTAAAAGCAGTATGATTAATTTGTAGTCAATCATACTGCTT
TTTATTTTAAGATAATATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MLKEIRGLEGMKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDM
VMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIA
HQKDMFTVAFVFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGSVKT
PTDVQYMYSDNENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREI
SFSDLAKVAHVSRSYLSTLFKKEIGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQ
YKNIT

Sequences:

>Translated_405_residues
MLKEIRGLEGMKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDM
VMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIA
HQKDMFTVAFVFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGSVKT
PTDVQYMYSDNENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREI
SFSDLAKVAHVSRSYLSTLFKKEIGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQ
YKNIT
>Mature_405_residues
MLKEIRGLEGMKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDM
VMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIA
HQKDMFTVAFVFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGSVKT
PTDVQYMYSDNENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREI
SFSDLAKVAHVSRSYLSTLFKKEIGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQ
YKNIT

Specific function: Unknown

COG id: COG5564

COG function: function code R; Predicted TIM-barrel enzyme, possibly a dioxygenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787987, Length=92, Percent_Identity=34.7826086956522, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR009215 [H]

Pfam domain/function: PF09370 TIM-br_sig_trns [H]

EC number: NA

Molecular weight: Translated: 45791; Mature: 45791

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKEIRGLEGMKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRF
CCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEEECCCHH
RQMGRSSLAGFLPFYNSNDMVMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKS
HHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
KGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAFVFNDMQAAQM
CCCCCCCCCCEEEEECCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEHHHHHHHHHHH
IEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGSVKT
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
PTDVQYMYSDNENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITK
CCCCEEEECCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
HYDYVEFVKEYVTKNYMREISFSDLAKVAHVSRSYLSTLFKKEIGCSFREYLVKFRMDKA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT
HHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLKEIRGLEGMKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRF
CCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEEECCCHH
RQMGRSSLAGFLPFYNSNDMVMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKS
HHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
KGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAFVFNDMQAAQM
CCCCCCCCCCEEEEECCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEHHHHHHHHHHH
IEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGSVKT
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
PTDVQYMYSDNENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITK
CCCCEEEECCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
HYDYVEFVKEYVTKNYMREISFSDLAKVAHVSRSYLSTLFKKEIGCSFREYLVKFRMDKA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT
HHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]