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The map label for this gene is int [H]

Identifier: 226948714

GI number: 226948714

Start: 1685563

End: 1686612

Strand: Reverse

Name: int [H]

Synonym: CLM_1614

Alternate gene names: 226948714

Gene position: 1686612-1685563 (Counterclockwise)

Preceding gene: 226948715

Following gene: 226948712

Centisome position: 40.59

GC content: 25.71

Gene sequence:

>1050_bases
ATGGCTGTTTATAAAAATGAAGAAAGAGGAACTTATTTTTGTACTTTTTATTACACTGATTGGACAGGTAAAAAGAAAAG
AAAAAAGAAAGAAGGTTTTAAAAGACAAAAAGATGCTAAAGACTATGAAAGAGATTTTTTAAATAAGCAAAAGAATGATC
CAGGTATTAATTTCGAGAATTTAGTTAATATATATTTAGATGATATTAAAAATAAAATAAGATTTACTACATTTAGACAA
AAGAAGCTTATAGTAGATTTAAAGATAGCCCCTTACTTTAAAGATATAAATTTAAATAATATAACCCCAAATCATATTAG
GAAATGGCAAAACAAAATAATGGAAAATGATTATAGTGATACATATTTAAGAACTATTAATAATCAACTTAGTGCCATAT
TTAACTTTGCTATTAGATATTATAATTTATCTAGCAACCCAGTGGTTAAAGCTGGTCCTATGGGTAAAAAGAACGCTGAC
GTAATGCAGTTTTGGACAGTAGAAGAATTTAAAACATTTATAGAATATGTTAAGAAGCCAATTTATAAATTAGCTTTTAA
AATTTTGTTCTGGACAGGTATAAGAAGTGGTGAATTATTAGCCTTAACATATAAAGATATAGATTTAGATAGAAAGATTA
TAAATATAAATAAGAACTATGCAAGAATAAATAAAAAGGATATAATAAACCCGCCTAAAACTTTGAAGAGTAAAAGAGAA
GTTACTATATCTGATTTCCTTTGTGAAGATATTAAAGAATATAAAAATAAGATATACAACTTAAATGAAAACGAAAGAAT
TTTTACCATAGCTAAACAAAATATTAATGCACAACTTAATAGAACTTGTAAAAAAAGTGGTATTAAAAAAATACGTCTGC
ATGATTTAAGACATTCCCACGCTTCGCTTTTAATAGAATTAGGATTTACTCCGCTTTTAATATCTGAAAGGCTTGGACAT
GAAAACATTGAAACTACATTAAATACATATTCACACTTGTACCCAAACAAACACACTGAGGTAGCTAAAGAATTAGATAA
ATTATATTAG

Upstream 100 bases:

>100_bases
ATGACAATAGGGAAATTAAAAAAATTATCTCGCGCTTTACAAGTTCATCCTGTAAAGCTTTTAGAAATATTATTGAAAGA
AGAAAGGAAAGGAAAAAGAA

Downstream 100 bases:

>100_bases
TACGTTTCTAGTACGTTTAAAGATTATTCAATTTATATAACGTTGATATATAGGGATTTATTAAGATTTTCGTTATAATC
CCACTTGAGTTATCATTATA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAVYKNEERGTYFCTFYYTDWTGKKKRKKKEGFKRQKDAKDYERDFLNKQKNDPGINFENLVNIYLDDIKNKIRFTTFRQ
KKLIVDLKIAPYFKDINLNNITPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNAD
VMQFWTVEEFKTFIEYVKKPIYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNYARINKKDIINPPKTLKSKRE
VTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINAQLNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGH
ENIETTLNTYSHLYPNKHTEVAKELDKLY

Sequences:

>Translated_349_residues
MAVYKNEERGTYFCTFYYTDWTGKKKRKKKEGFKRQKDAKDYERDFLNKQKNDPGINFENLVNIYLDDIKNKIRFTTFRQ
KKLIVDLKIAPYFKDINLNNITPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNAD
VMQFWTVEEFKTFIEYVKKPIYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNYARINKKDIINPPKTLKSKRE
VTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINAQLNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGH
ENIETTLNTYSHLYPNKHTEVAKELDKLY
>Mature_348_residues
AVYKNEERGTYFCTFYYTDWTGKKKRKKKEGFKRQKDAKDYERDFLNKQKNDPGINFENLVNIYLDDIKNKIRFTTFRQK
KLIVDLKIAPYFKDINLNNITPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNADV
MQFWTVEEFKTFIEYVKKPIYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNYARINKKDIINPPKTLKSKREV
TISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINAQLNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGHE
NIETTLNTYSHLYPNKHTEVAKELDKLY

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=235, Percent_Identity=25.9574468085106, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787607, Length=250, Percent_Identity=24.4, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41546; Mature: 41415

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVYKNEERGTYFCTFYYTDWTGKKKRKKKEGFKRQKDAKDYERDFLNKQKNDPGINFEN
CCCEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHH
LVNIYLDDIKNKIRFTTFRQKKLIVDLKIAPYFKDINLNNITPNHIRKWQNKIMENDYSD
HHHHHHHHHHCHHEEEEEECCEEEEEEEECCEEECCCCCCCCHHHHHHHHHHHHCCCCCH
TYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNADVMQFWTVEEFKTFIEYVKKP
HHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCHHHEEEHHHHHHHHHHHHHH
IYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNYARINKKDIINPPKTLKSKRE
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCHHHCCHHHCCCCCHHHHCCCC
VTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINAQLNRTCKKSGIKKIRLHDLRHSH
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEHHHHHHHHH
ASLLIELGFTPLLISERLGHENIETTLNTYSHLYPNKHTEVAKELDKLY
HHEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AVYKNEERGTYFCTFYYTDWTGKKKRKKKEGFKRQKDAKDYERDFLNKQKNDPGINFEN
CCEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHH
LVNIYLDDIKNKIRFTTFRQKKLIVDLKIAPYFKDINLNNITPNHIRKWQNKIMENDYSD
HHHHHHHHHHCHHEEEEEECCEEEEEEEECCEEECCCCCCCCHHHHHHHHHHHHCCCCCH
TYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNADVMQFWTVEEFKTFIEYVKKP
HHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCHHHEEEHHHHHHHHHHHHHH
IYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNYARINKKDIINPPKTLKSKRE
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCHHHCCHHHCCCCCHHHHCCCC
VTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINAQLNRTCKKSGIKKIRLHDLRHSH
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEHHHHHHHHH
ASLLIELGFTPLLISERLGHENIETTLNTYSHLYPNKHTEVAKELDKLY
HHEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]