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The map label for this gene is tpn32 [H]

Identifier: 226948362

GI number: 226948362

Start: 1297250

End: 1298062

Strand: Direct

Name: tpn32 [H]

Synonym: CLM_1245

Alternate gene names: 226948362

Gene position: 1297250-1298062 (Clockwise)

Preceding gene: 226948361

Following gene: 226948363

Centisome position: 31.22

GC content: 28.41

Gene sequence:

>813_bases
ATGAATAAAAAAAGATTATTAGGAATAACATTATCAGTTTTCTTAACATTAGGAGTGGTAGGTTGCTCTTCAAAAGAAAG
TAAAGAAACAGTTAATGATAAAAAAACTATTGTAGTTGGTGCAACTCCAGTACCAGCAGGAGAAATTTTAAAAGTGGCTC
AGCCTTTATTAGAGAAAAAAGGCTATAAATTAGAAATAAAAGAGTTTACTGATTATGTTACTCCAAATACTGCTTTAAAT
GATGGAGAAATAGATGCAAACTTTTTTCAACATACACCTTATTTAGATAACTTTAATGTAGAAAAGAAAACACAGTTAGA
GGCTGTAAAAAAGATTTATATATCACCTTTAGCTTTATATTCAAATAAAACAAAAAAATTAGAGGGGTTAAAAGATGGAG
CTACTATTGCAGTTCCTAATGATCCTACTAATGAAACAAGAGCACTGAGATTATTAGAAAAATCAGGACTTATAAAACTT
AAAAAAGGAGATACTTTAACTAAGGGTGATATAGCTGAAAATAAAAAGAATATAAAAATCGAGGAAATAGATGCACCACA
ATTACCAAGAATATTAAATGATGTAGATGCTGCGGTAATAAATACAAACTATGCTATAGAGGCAAAATTAAATCCTTTAA
AGGATTCTATATTAATTGAAGATAAAGATTCTCCTTATGCAAATGTAATAGCTGTTAAAAAAGGAGATAAGGACAAAGCT
CACATAAAAGCACTTTCAGAGGCTTTAACATCTAAAGAAGTAAAGGACTTTATAAATGAAAAATATAAAGGTGTTGTAAT
TCCAACATTTTAG

Upstream 100 bases:

>100_bases
AATACAAAGTTTAGGAAATATACTTTACAAGAGATTAAATAAATAAGCATCATATAGAAATTTAAAAAAATATTATTTTA
AATTTTAGGAGGAACTAATT

Downstream 100 bases:

>100_bases
TATTTAATTGTATTAAAATATTTTGACATATCTAAGAAAATTTTAGTTTAATTATTTGATATTATTAACGTTCAGTGATT
AGAAAATATTTTATATTGAC

Product: NLPA family lipoprotein

Products: NA

Alternate protein names: 29 kDa protein [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNKKRLLGITLSVFLTLGVVGCSSKESKETVNDKKTIVVGATPVPAGEILKVAQPLLEKKGYKLEIKEFTDYVTPNTALN
DGEIDANFFQHTPYLDNFNVEKKTQLEAVKKIYISPLALYSNKTKKLEGLKDGATIAVPNDPTNETRALRLLEKSGLIKL
KKGDTLTKGDIAENKKNIKIEEIDAPQLPRILNDVDAAVINTNYAIEAKLNPLKDSILIEDKDSPYANVIAVKKGDKDKA
HIKALSEALTSKEVKDFINEKYKGVVIPTF

Sequences:

>Translated_270_residues
MNKKRLLGITLSVFLTLGVVGCSSKESKETVNDKKTIVVGATPVPAGEILKVAQPLLEKKGYKLEIKEFTDYVTPNTALN
DGEIDANFFQHTPYLDNFNVEKKTQLEAVKKIYISPLALYSNKTKKLEGLKDGATIAVPNDPTNETRALRLLEKSGLIKL
KKGDTLTKGDIAENKKNIKIEEIDAPQLPRILNDVDAAVINTNYAIEAKLNPLKDSILIEDKDSPYANVIAVKKGDKDKA
HIKALSEALTSKEVKDFINEKYKGVVIPTF
>Mature_270_residues
MNKKRLLGITLSVFLTLGVVGCSSKESKETVNDKKTIVVGATPVPAGEILKVAQPLLEKKGYKLEIKEFTDYVTPNTALN
DGEIDANFFQHTPYLDNFNVEKKTQLEAVKKIYISPLALYSNKTKKLEGLKDGATIAVPNDPTNETRALRLLEKSGLIKL
KKGDTLTKGDIAENKKNIKIEEIDAPQLPRILNDVDAAVINTNYAIEAKLNPLKDSILIEDKDSPYANVIAVKKGDKDKA
HIKALSEALTSKEVKDFINEKYKGVVIPTF

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786396, Length=253, Percent_Identity=46.2450592885375, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1790093, Length=247, Percent_Identity=38.8663967611336, Blast_Score=174, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 29794; Mature: 29794

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKRLLGITLSVFLTLGVVGCSSKESKETVNDKKTIVVGATPVPAGEILKVAQPLLEKK
CCCCEEEHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
GYKLEIKEFTDYVTPNTALNDGEIDANFFQHTPYLDNFNVEKKTQLEAVKKIYISPLALY
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH
SNKTKKLEGLKDGATIAVPNDPTNETRALRLLEKSGLIKLKKGDTLTKGDIAENKKNIKI
CCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEE
EEIDAPQLPRILNDVDAAVINTNYAIEAKLNPLKDSILIEDKDSPYANVIAVKKGDKDKA
EECCCCCHHHHHHHHCCEEEECCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCHHH
HIKALSEALTSKEVKDFINEKYKGVVIPTF
HHHHHHHHHHHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MNKKRLLGITLSVFLTLGVVGCSSKESKETVNDKKTIVVGATPVPAGEILKVAQPLLEKK
CCCCEEEHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
GYKLEIKEFTDYVTPNTALNDGEIDANFFQHTPYLDNFNVEKKTQLEAVKKIYISPLALY
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH
SNKTKKLEGLKDGATIAVPNDPTNETRALRLLEKSGLIKLKKGDTLTKGDIAENKKNIKI
CCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEE
EEIDAPQLPRILNDVDAAVINTNYAIEAKLNPLKDSILIEDKDSPYANVIAVKKGDKDKA
EECCCCCHHHHHHHHCCEEEECCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCHHH
HIKALSEALTSKEVKDFINEKYKGVVIPTF
HHHHHHHHHHHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]