Click here to switch to the map view.

The map label for this gene is 226948315

Identifier: 226948315

GI number: 226948315

Start: 1236583

End: 1238391

Strand: Reverse

Name: 226948315

Synonym: CLM_1195

Alternate gene names: NA

Gene position: 1238391-1236583 (Counterclockwise)

Preceding gene: 226948319

Following gene: 226948308

Centisome position: 29.8

GC content: 31.84

Gene sequence:

>1809_bases
ATGAGTATTAAAAAAGAAAGAATTAAAGTATATGATATGACATGTACCTCTTGTGAAAATCGAGTTGAAAAAGCTATTAA
AAAATTAGAAGGAGTATTACATGCAAAGGCTTCTTACATGGGAGCGTTTGTTGAAATTGAATATGATGATAAATTATGCA
ACCAAAATAAAATTAAATCCGCTATAAAAAATGCTGGATACAGCACACAAAATTCTAATGACTATAAATTTATGGGAATT
TTTATAGTTGTTGCAGCTATTATAATGCTGGGTTTAAAGACTAGTGGTTTTGATATGGAAGAAAAGCTAACTAATGCTTC
CTATATGATTCTTTTCGTAGTAGGGATTCTAACATCAATTCACTGTGTAGGCATGTGCGGTGGAATTATGCTTTCACAAA
GTTTATCTAGTGAAAGTAATAATAAGTTCGAAGCTATGAAACCAGCAGTTTTATATAATTTAGGAAGAGTTTTATCTTAC
ACACTACTTGGTGGAATAATTGGTACCCTAGGTTCAGTATTTTCGCTTTCTATTACTACAAAAGCAACCCTTCAAATATT
TGCTGGTCTATTTATGATTATAATGGGTTTTAATATGGCTGGATTTAATATATTTAGAAAATTCCATATTAAGTTACCCC
ACTTTGCATGTAAAGTTAAAAACAAATCTGGTTCACCATTTATCGTTGGTCTTTTAAACGGATTTATGCCCTGTGGACCT
CTTCAAACTATGCAGCTTTTCGCTCTAGGTACAGGAAGTGCATTAAAAGGTTCTTTATCAATGTTTATGTTTTCTTTAGG
AACAGTGCCACTTATGCTAACCTTTGGTGCATTATCAGGTCTTTTAAGTAAAGGTCATACTAAAAAATTACTTAAATTTA
GTGGAGTCCTTATTATAGTTCTTGGACTTATAATGGGTAATAGAGGTCTTACTCTTGTTGGTATAAATATTAATCCTATA
ACTACTCTTGCTAGCAATACTAAAAGTTCAGATGATTTTTCTAATACAAATGTTGCTAAAGCAACTTTAGAAAATGGTGT
TCAGGTTATTAAAATGACTGCTAATAACAATGGTTACACACCTAATGCTTTTTATGTGCAAAAGGGAATACCTGTTAAGT
GGATAATTAATGGAGAACAACTTAATTCATGTAATAATGCCATTATAGCTCAATCTATAATGGAAAAAGAATTTAAGATA
AAAAAAGGAGAAAATATTATAAACTTTACCCCTGGTGACAAAGATATAAATTTTAGCTGTTGGATGGGAATGATAAGCGG
CGTAATTAAGGTTGTAGATAACCTTGATGCCGTAGATACATCAAAAACTGATCCATCACTACCTCCTGCGAGCACAGGTC
CTAGCTGCTGTGCTGTACCAGTAGATGAATCTGATCAATCAGAACAATCTAGCATTTATGGCAACAATATGGCTCTAGTG
CCAACTGAAAAGTTAATTAATAAAGCTCTGCCATCTGGTGAATACCAAAGTGCAACGTTTAAAGGTATTGGTTCTGAATT
ACAGCCATTAATAGCTGTTACAGGTAATAGTTCAAAAACTAAATTAACCTTTAATTTAAATGATTTCGATAATGCTGAAG
GTAAATATATAATCTTGGATTTAGAAACTCGTAATGAGATCTTTTCATTTACCGCAAAAAAAGGTGTAAATGAAGTAGAG
TTTAGTCCTAAAAAAGCTGGTAGTTATGGAATATTAAAAGATAATGTAATTTTAGGGATAATTGAAGTGGTTGATGATTT
AGAGTCCGCTGATATGGGAAAAATACGAGAAAAACATGTTGATGAGTAA

Upstream 100 bases:

>100_bases
TAGTATTTTACTTAAGAAAATAAGAATCATCTAACTTTTTATTATGATAGGTAAAGTATGAAATTACTTCATCTTATAAG
TACATATTAGGAGGAATTCT

Downstream 100 bases:

>100_bases
ACAAGAATATTCTTAAAATAAAAAAAGAGAAGTGTATGATAAATTTAATATCATCCTTCTCTTTTTTTCTTATCTACCTT
ACTATAACTATTTCAATTTA

Product: heavy metal-associated domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 602; Mature: 601

Protein sequence:

>602_residues
MSIKKERIKVYDMTCTSCENRVEKAIKKLEGVLHAKASYMGAFVEIEYDDKLCNQNKIKSAIKNAGYSTQNSNDYKFMGI
FIVVAAIIMLGLKTSGFDMEEKLTNASYMILFVVGILTSIHCVGMCGGIMLSQSLSSESNNKFEAMKPAVLYNLGRVLSY
TLLGGIIGTLGSVFSLSITTKATLQIFAGLFMIIMGFNMAGFNIFRKFHIKLPHFACKVKNKSGSPFIVGLLNGFMPCGP
LQTMQLFALGTGSALKGSLSMFMFSLGTVPLMLTFGALSGLLSKGHTKKLLKFSGVLIIVLGLIMGNRGLTLVGININPI
TTLASNTKSSDDFSNTNVAKATLENGVQVIKMTANNNGYTPNAFYVQKGIPVKWIINGEQLNSCNNAIIAQSIMEKEFKI
KKGENIINFTPGDKDINFSCWMGMISGVIKVVDNLDAVDTSKTDPSLPPASTGPSCCAVPVDESDQSEQSSIYGNNMALV
PTEKLINKALPSGEYQSATFKGIGSELQPLIAVTGNSSKTKLTFNLNDFDNAEGKYIILDLETRNEIFSFTAKKGVNEVE
FSPKKAGSYGILKDNVILGIIEVVDDLESADMGKIREKHVDE

Sequences:

>Translated_602_residues
MSIKKERIKVYDMTCTSCENRVEKAIKKLEGVLHAKASYMGAFVEIEYDDKLCNQNKIKSAIKNAGYSTQNSNDYKFMGI
FIVVAAIIMLGLKTSGFDMEEKLTNASYMILFVVGILTSIHCVGMCGGIMLSQSLSSESNNKFEAMKPAVLYNLGRVLSY
TLLGGIIGTLGSVFSLSITTKATLQIFAGLFMIIMGFNMAGFNIFRKFHIKLPHFACKVKNKSGSPFIVGLLNGFMPCGP
LQTMQLFALGTGSALKGSLSMFMFSLGTVPLMLTFGALSGLLSKGHTKKLLKFSGVLIIVLGLIMGNRGLTLVGININPI
TTLASNTKSSDDFSNTNVAKATLENGVQVIKMTANNNGYTPNAFYVQKGIPVKWIINGEQLNSCNNAIIAQSIMEKEFKI
KKGENIINFTPGDKDINFSCWMGMISGVIKVVDNLDAVDTSKTDPSLPPASTGPSCCAVPVDESDQSEQSSIYGNNMALV
PTEKLINKALPSGEYQSATFKGIGSELQPLIAVTGNSSKTKLTFNLNDFDNAEGKYIILDLETRNEIFSFTAKKGVNEVE
FSPKKAGSYGILKDNVILGIIEVVDDLESADMGKIREKHVDE
>Mature_601_residues
SIKKERIKVYDMTCTSCENRVEKAIKKLEGVLHAKASYMGAFVEIEYDDKLCNQNKIKSAIKNAGYSTQNSNDYKFMGIF
IVVAAIIMLGLKTSGFDMEEKLTNASYMILFVVGILTSIHCVGMCGGIMLSQSLSSESNNKFEAMKPAVLYNLGRVLSYT
LLGGIIGTLGSVFSLSITTKATLQIFAGLFMIIMGFNMAGFNIFRKFHIKLPHFACKVKNKSGSPFIVGLLNGFMPCGPL
QTMQLFALGTGSALKGSLSMFMFSLGTVPLMLTFGALSGLLSKGHTKKLLKFSGVLIIVLGLIMGNRGLTLVGININPIT
TLASNTKSSDDFSNTNVAKATLENGVQVIKMTANNNGYTPNAFYVQKGIPVKWIINGEQLNSCNNAIIAQSIMEKEFKIK
KGENIINFTPGDKDINFSCWMGMISGVIKVVDNLDAVDTSKTDPSLPPASTGPSCCAVPVDESDQSEQSSIYGNNMALVP
TEKLINKALPSGEYQSATFKGIGSELQPLIAVTGNSSKTKLTFNLNDFDNAEGKYIILDLETRNEIFSFTAKKGVNEVEF
SPKKAGSYGILKDNVILGIIEVVDDLESADMGKIREKHVDE

Specific function: Unknown

COG id: COG2836

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65253; Mature: 65122

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS01047 HMA_1 ; PS50846 HMA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKKERIKVYDMTCTSCENRVEKAIKKLEGVLHAKASYMGAFVEIEYDDKLCNQNKIKS
CCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECHHHCCHHHHHH
AIKNAGYSTQNSNDYKFMGIFIVVAAIIMLGLKTSGFDMEEKLTNASYMILFVVGILTSI
HHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHH
HCVGMCGGIMLSQSLSSESNNKFEAMKPAVLYNLGRVLSYTLLGGIIGTLGSVFSLSITT
HHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECH
KATLQIFAGLFMIIMGFNMAGFNIFRKFHIKLPHFACKVKNKSGSPFIVGLLNGFMPCGP
HHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCEEEEEECCCCCCEEEEHHHCCCCCCC
LQTMQLFALGTGSALKGSLSMFMFSLGTVPLMLTFGALSGLLSKGHTKKLLKFSGVLIIV
CCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
LGLIMGNRGLTLVGININPITTLASNTKSSDDFSNTNVAKATLENGVQVIKMTANNNGYT
HHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCCC
PNAFYVQKGIPVKWIINGEQLNSCNNAIIAQSIMEKEFKIKKGENIINFTPGDKDINFSC
CCEEEEECCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH
WMGMISGVIKVVDNLDAVDTSKTDPSLPPASTGPSCCAVPVDESDQSEQSSIYGNNMALV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCEEEE
PTEKLINKALPSGEYQSATFKGIGSELQPLIAVTGNSSKTKLTFNLNDFDNAEGKYIILD
EHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
LETRNEIFSFTAKKGVNEVEFSPKKAGSYGILKDNVILGIIEVVDDLESADMGKIREKHV
ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHCC
DE
CC
>Mature Secondary Structure 
SIKKERIKVYDMTCTSCENRVEKAIKKLEGVLHAKASYMGAFVEIEYDDKLCNQNKIKS
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECHHHCCHHHHHH
AIKNAGYSTQNSNDYKFMGIFIVVAAIIMLGLKTSGFDMEEKLTNASYMILFVVGILTSI
HHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHH
HCVGMCGGIMLSQSLSSESNNKFEAMKPAVLYNLGRVLSYTLLGGIIGTLGSVFSLSITT
HHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECH
KATLQIFAGLFMIIMGFNMAGFNIFRKFHIKLPHFACKVKNKSGSPFIVGLLNGFMPCGP
HHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCEEEEEECCCCCCEEEEHHHCCCCCCC
LQTMQLFALGTGSALKGSLSMFMFSLGTVPLMLTFGALSGLLSKGHTKKLLKFSGVLIIV
CCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
LGLIMGNRGLTLVGININPITTLASNTKSSDDFSNTNVAKATLENGVQVIKMTANNNGYT
HHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCCC
PNAFYVQKGIPVKWIINGEQLNSCNNAIIAQSIMEKEFKIKKGENIINFTPGDKDINFSC
CCEEEEECCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH
WMGMISGVIKVVDNLDAVDTSKTDPSLPPASTGPSCCAVPVDESDQSEQSSIYGNNMALV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCEEEE
PTEKLINKALPSGEYQSATFKGIGSELQPLIAVTGNSSKTKLTFNLNDFDNAEGKYIILD
EHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
LETRNEIFSFTAKKGVNEVEFSPKKAGSYGILKDNVILGIIEVVDDLESADMGKIREKHV
ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHCC
DE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA