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The map label for this gene is cbiD [H]

Identifier: 226948209

GI number: 226948209

Start: 1131508

End: 1132587

Strand: Direct

Name: cbiD [H]

Synonym: CLM_1086

Alternate gene names: 226948209

Gene position: 1131508-1132587 (Clockwise)

Preceding gene: 226948208

Following gene: 226948210

Centisome position: 27.23

GC content: 33.33

Gene sequence:

>1080_bases
ATGCTAGATTTATATGTAAATTGTGATGGAAAAAAACTAAGATGCGGATATACCACCGGTTCCTGTGCAGCTGCAGCAGC
TAAGGCAGCAGCTATAACTCTTTTTTATAATAAAAAATTAAAAGAAATAAATATAGATACTCCTAAAGGTATAGAACTCA
CCATTCCCATTGAAAAAATAGTAGAAGATGAGAACTTTATAGAATGTGCAGTTATAAAGGATGGTGGAGATGATGTGGAC
ATAACCCACGGCATAGAAATATGGGCAAGGGCGAAAAAAAAGCCCATTGGATACACTTTAAAAGGTGGAAAAGGTGTTGG
AGTAGTTTGCGGTGAAGGCTTGTATGTCCCAAAAGGAGAACCAGCAATAAATCCGGTTCCACGTTCTATGATAGAAAAAG
AGGTAAGGTCTGTTATCCCAAGGGATTCCGGTGTGGAAATAACTATATTTGTTCCAAAGGGAGAGGAGATAGCTAAAAAA
ACCTTTAATCCAAGATTAAATATTATAAGGGGGATATCCATATTAGGGACAACAGGAATAGTAATGCCTATGTCCGAAGA
TGCTCTAAAAGCCTCCATAGAATTAGAAATAAATCAAAAAACCTGCCATGGTGAAAAAGAATTAATACTTTTATTTGGTA
ATATGGGTGAAAAAATGGCAAAAGAGCTTAATTTGAAAGAAAACAATATGGTTATAATGTCTAACTATGTAGGCTTTGCC
CTTAATTGTTGTATGGCAAGAAAACTAGAGAAAATAACTATAGTAGGGCATATAGGAAAAATATCTAAAATAGCTTCCGG
TTGTTTCAATACTCATAGCAGAATATGTGATACTAGACTAGAAATATTAGCTTTAGAATTAGCACTTATGGGATATGATA
AAGATTTAGTAACTAAAATATATAATCAAAAAACTACAGAGGGTGCGGTAAATTTATTAGGAGAAGGTTACGAAAAACTT
TATAAAAATTTAGGGAAAAAAATAATAAGAAAAATAGAGCAATATGCCTATGATTCTATAAAAGCGGATGTTGTAATGTA
TTCCATGGGAAGAGGGGTACTATATTCTTCTATAGAATAA

Upstream 100 bases:

>100_bases
AGCTAAGCTGTGGGCAAATAAAAATAAGAATGTTAAATGTTTTTTTAGTGGAAAGAAAAAAGGAACTCATAGTATTAACA
AAATATAATTTGGAGGATTT

Downstream 100 bases:

>100_bases
ATATTAATGAAGCTACTGCAAATTTTAGACTTATTGGAGGAATTATTTCTATTTTATAAGGAAGTTATATATTCTTAGCT
AGATATTATATATTGAAAGA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAITLFYNKKLKEINIDTPKGIELTIPIEKIVEDENFIECAVIKDGGDDVD
ITHGIEIWARAKKKPIGYTLKGGKGVGVVCGEGLYVPKGEPAINPVPRSMIEKEVRSVIPRDSGVEITIFVPKGEEIAKK
TFNPRLNIIRGISILGTTGIVMPMSEDALKASIELEINQKTCHGEKELILLFGNMGEKMAKELNLKENNMVIMSNYVGFA
LNCCMARKLEKITIVGHIGKISKIASGCFNTHSRICDTRLEILALELALMGYDKDLVTKIYNQKTTEGAVNLLGEGYEKL
YKNLGKKIIRKIEQYAYDSIKADVVMYSMGRGVLYSSIE

Sequences:

>Translated_359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAITLFYNKKLKEINIDTPKGIELTIPIEKIVEDENFIECAVIKDGGDDVD
ITHGIEIWARAKKKPIGYTLKGGKGVGVVCGEGLYVPKGEPAINPVPRSMIEKEVRSVIPRDSGVEITIFVPKGEEIAKK
TFNPRLNIIRGISILGTTGIVMPMSEDALKASIELEINQKTCHGEKELILLFGNMGEKMAKELNLKENNMVIMSNYVGFA
LNCCMARKLEKITIVGHIGKISKIASGCFNTHSRICDTRLEILALELALMGYDKDLVTKIYNQKTTEGAVNLLGEGYEKL
YKNLGKKIIRKIEQYAYDSIKADVVMYSMGRGVLYSSIE
>Mature_359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAITLFYNKKLKEINIDTPKGIELTIPIEKIVEDENFIECAVIKDGGDDVD
ITHGIEIWARAKKKPIGYTLKGGKGVGVVCGEGLYVPKGEPAINPVPRSMIEKEVRSVIPRDSGVEITIFVPKGEEIAKK
TFNPRLNIIRGISILGTTGIVMPMSEDALKASIELEINQKTCHGEKELILLFGNMGEKMAKELNLKENNMVIMSNYVGFA
LNCCMARKLEKITIVGHIGKISKIASGCFNTHSRICDTRLEILALELALMGYDKDLVTKIYNQKTTEGAVNLLGEGYEKL
YKNLGKKIIRKIEQYAYDSIKADVVMYSMGRGVLYSSIE

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 39512; Mature: 39512

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAITLFYNKKLKEINIDTPKGIELTIPIEKI
CEEEEEECCCCEEEEECCCCHHHHHHHHHEEEEEEECCCEEEEECCCCCCEEEEECHHHH
VEDENFIECAVIKDGGDDVDITHGIEIWARAKKKPIGYTLKGGKGVGVVCGEGLYVPKGE
CCCCCEEEEEEEECCCCCEEEECCHHHHHHHCCCCCCEEEECCCEEEEEECCCEECCCCC
PAINPVPRSMIEKEVRSVIPRDSGVEITIFVPKGEEIAKKTFNPRLNIIRGISILGTTGI
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEHEECEEEECCCCE
VMPMSEDALKASIELEINQKTCHGEKELILLFGNMGEKMAKELNLKENNMVIMSNYVGFA
EEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCHHHH
LNCCMARKLEKITIVGHIGKISKIASGCFNTHSRICDTRLEILALELALMGYDKDLVTKI
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YNQKTTEGAVNLLGEGYEKLYKNLGKKIIRKIEQYAYDSIKADVVMYSMGRGVLYSSIE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEECCC
>Mature Secondary Structure
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAITLFYNKKLKEINIDTPKGIELTIPIEKI
CEEEEEECCCCEEEEECCCCHHHHHHHHHEEEEEEECCCEEEEECCCCCCEEEEECHHHH
VEDENFIECAVIKDGGDDVDITHGIEIWARAKKKPIGYTLKGGKGVGVVCGEGLYVPKGE
CCCCCEEEEEEEECCCCCEEEECCHHHHHHHCCCCCCEEEECCCEEEEEECCCEECCCCC
PAINPVPRSMIEKEVRSVIPRDSGVEITIFVPKGEEIAKKTFNPRLNIIRGISILGTTGI
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEHEECEEEECCCCE
VMPMSEDALKASIELEINQKTCHGEKELILLFGNMGEKMAKELNLKENNMVIMSNYVGFA
EEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCHHHH
LNCCMARKLEKITIVGHIGKISKIASGCFNTHSRICDTRLEILALELALMGYDKDLVTKI
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YNQKTTEGAVNLLGEGYEKLYKNLGKKIIRKIEQYAYDSIKADVVMYSMGRGVLYSSIE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA