Click here to switch to the map view.

The map label for this gene is ysnF [H]

Identifier: 226948164

GI number: 226948164

Start: 1089858

End: 1090526

Strand: Direct

Name: ysnF [H]

Synonym: CLM_1038

Alternate gene names: 226948164

Gene position: 1089858-1090526 (Clockwise)

Preceding gene: 226948163

Following gene: 226948165

Centisome position: 26.23

GC content: 30.04

Gene sequence:

>669_bases
ATGGTAAATAAGGATGTACCTGATATAGAAAGTAGCAAATATTTAACAGGTGCTATTATTGGAGGAATAATTGGTTTTAT
AATTGCTATTTTGTATAAGTTCTCTATTTTAACTATACCTGGATTTGTAACTATATTTACAATTACATCAATTGACTCAA
TAATAATCGGAACTATATTAGGCATTGTTGTGGGCTTAATTATATGTAGGCTAATGGTTCAGAGTAAGACATATGAGAAC
GATATTGAAAATGCTCCTTACAATTCAGATAGTGATATGAAGATGCAACTTCGCGAAGAACAGATAGAAATATCTAAGAA
AAAAATACAAACTGGTGAGGTATCTATTCACAAAGAAGTTTTAACCGAAGAAAAGAATATTACTGTACCTGTAAAACGTG
AGGAACTTGTTATTGAAAATACTGTTTGTGATCCGCAACTTCATGATAAATCAGATGGTCATACTGAAACTATTCGTATT
CCTATAAGAGAAGAACGTATTGACATATGCAAGCAACCAGTAACTTTAGAAGATGTTTCAGTTAGTAATCATCAATATAA
AGAGGTAAAGCATATAACTGAAACATTAAAAAAGGAAATACCTCAAATTAGTATTAATGGGGATGCAAAAATTGTGGATA
AGGAAATCGATAAAAAATATCAAAGCTAA

Upstream 100 bases:

>100_bases
TAATGATGAGGGCTTCCATTAAAGAATTTATAAAATAAATAAAAAAACACCTCTCAAATTGTATATCAGATTTAAGAGGT
GTTTTTTAGGAGGATAAAGC

Downstream 100 bases:

>100_bases
AAATATGAGATAATTAATAGCTCTAAACACTTTCTGATTGCAAAAAGGGAGGATTAGGAACCGTTTTGTTTAACGTCACA
ACTGAAAAATGCACAATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MVNKDVPDIESSKYLTGAIIGGIIGFIIAILYKFSILTIPGFVTIFTITSIDSIIIGTILGIVVGLIICRLMVQSKTYEN
DIENAPYNSDSDMKMQLREEQIEISKKKIQTGEVSIHKEVLTEEKNITVPVKREELVIENTVCDPQLHDKSDGHTETIRI
PIREERIDICKQPVTLEDVSVSNHQYKEVKHITETLKKEIPQISINGDAKIVDKEIDKKYQS

Sequences:

>Translated_222_residues
MVNKDVPDIESSKYLTGAIIGGIIGFIIAILYKFSILTIPGFVTIFTITSIDSIIIGTILGIVVGLIICRLMVQSKTYEN
DIENAPYNSDSDMKMQLREEQIEISKKKIQTGEVSIHKEVLTEEKNITVPVKREELVIENTVCDPQLHDKSDGHTETIRI
PIREERIDICKQPVTLEDVSVSNHQYKEVKHITETLKKEIPQISINGDAKIVDKEIDKKYQS
>Mature_222_residues
MVNKDVPDIESSKYLTGAIIGGIIGFIIAILYKFSILTIPGFVTIFTITSIDSIIIGTILGIVVGLIICRLMVQSKTYEN
DIENAPYNSDSDMKMQLREEQIEISKKKIQTGEVSIHKEVLTEEKNITVPVKREELVIENTVCDPQLHDKSDGHTETIRI
PIREERIDICKQPVTLEDVSVSNHQYKEVKHITETLKKEIPQISINGDAKIVDKEIDKKYQS

Specific function: Unknown

COG id: COG3861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011756
- InterPro:   IPR019060 [H]

Pfam domain/function: PF09557 DUF2382 [H]

EC number: NA

Molecular weight: Translated: 25079; Mature: 25079

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNKDVPDIESSKYLTGAIIGGIIGFIIAILYKFSILTIPGFVTIFTITSIDSIIIGTIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GIVVGLIICRLMVQSKTYENDIENAPYNSDSDMKMQLREEQIEISKKKIQTGEVSIHKEV
HHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LTEEKNITVPVKREELVIENTVCDPQLHDKSDGHTETIRIPIREERIDICKQPVTLEDVS
HCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEECCC
VSNHQYKEVKHITETLKKEIPQISINGDAKIVDKEIDKKYQS
CCCHHHHHHHHHHHHHHHHCCEEEECCCCEEHHHHHHHHCCC
>Mature Secondary Structure
MVNKDVPDIESSKYLTGAIIGGIIGFIIAILYKFSILTIPGFVTIFTITSIDSIIIGTIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GIVVGLIICRLMVQSKTYENDIENAPYNSDSDMKMQLREEQIEISKKKIQTGEVSIHKEV
HHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LTEEKNITVPVKREELVIENTVCDPQLHDKSDGHTETIRIPIREERIDICKQPVTLEDVS
HCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEECCC
VSNHQYKEVKHITETLKKEIPQISINGDAKIVDKEIDKKYQS
CCCHHHHHHHHHHHHHHHHCCEEEECCCCEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377; 10568751; 11988534 [H]