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The map label for this gene is 226948085

Identifier: 226948085

GI number: 226948085

Start: 1007787

End: 1008392

Strand: Direct

Name: 226948085

Synonym: CLM_0948

Alternate gene names: NA

Gene position: 1007787-1008392 (Clockwise)

Preceding gene: 226948084

Following gene: 226948087

Centisome position: 24.25

GC content: 32.51

Gene sequence:

>606_bases
GTGGACATTAGCAAACAAATAAAAAAATATAGACTCGATTCAAAATTATCGCAGGAGGATTTAGCTGAAAAAGTATTTGT
AACACGGCAGACAATTTCAAACTGGGAAAACGGTAAGAACTATCCTGATATAAATAGCCTGGTACTATTAAGCACTCTCT
TTGGTGTTTCTCTTGATATTCTAGTTAAAGGAGATTTGGAGGAAATGAAAGAAGAAATTAAAACAGAGGATATCAAAAGG
TTTAACCGTGACGGCACGATTTTTACTGTACTACTTATGGCAACAGTAGTATTGGTCGTTCCACTATTTCTTTACTTAAA
TTTTATTGGAATTGCAATCTGGTTAGTGCTATTCGGCATTACAATGTATTATGCAATATGCCTTGAAAAGCAAAAGAAAA
CTCATGACATTCAAACATACAGAGAAATCATAGCTTTTACCGAGGGAAAAAAACTTGATCAAATTGAAAAGAGTTGTGAG
GTTGGAAAACGCCCATATCAAAAAGCGTTCTCAGTAATTTGTTCAGGATTGATTACAATAGTTGTCATTATAGGAATGTA
TTTTTTATTTAGATTAATTCAGTATATCAAATTGTTACTGGTTTAG

Upstream 100 bases:

>100_bases
TGTAAAATCCATTTTACATATTAAAAAGTAGTGATGTAAAATAGATTTGATAGCATGAACACGCTACGAACGATAGAATG
TAAGCAGGAGGAATATCAAA

Downstream 100 bases:

>100_bases
AAATTCCAATTTGTCTGATTGAACAAAACTACCTTAATAATAGTTTTGTTAAGGAATATTTTCATAAATTTATTACATTA
TCTATATTGGTATGTAGATA

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Xin-Antitoxin System Antitoxin Component Xre Family; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Xre Family; Transcription Regulator; Phage CI Repressor

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVKGDLEEMKEEIKTEDIKR
FNRDGTIFTVLLMATVVLVVPLFLYLNFIGIAIWLVLFGITMYYAICLEKQKKTHDIQTYREIIAFTEGKKLDQIEKSCE
VGKRPYQKAFSVICSGLITIVVIIGMYFLFRLIQYIKLLLV

Sequences:

>Translated_201_residues
MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVKGDLEEMKEEIKTEDIKR
FNRDGTIFTVLLMATVVLVVPLFLYLNFIGIAIWLVLFGITMYYAICLEKQKKTHDIQTYREIIAFTEGKKLDQIEKSCE
VGKRPYQKAFSVICSGLITIVVIIGMYFLFRLIQYIKLLLV
>Mature_201_residues
MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVKGDLEEMKEEIKTEDIKR
FNRDGTIFTVLLMATVVLVVPLFLYLNFIGIAIWLVLFGITMYYAICLEKQKKTHDIQTYREIIAFTEGKKLDQIEKSCE
VGKRPYQKAFSVICSGLITIVVIIGMYFLFRLIQYIKLLLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23265; Mature: 23265

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LVKGDLEEMKEEIKTEDIKRFNRDGTIFTVLLMATVVLVVPLFLYLNFIGIAIWLVLFGI
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMYYAICLEKQKKTHDIQTYREIIAFTEGKKLDQIEKSCEVGKRPYQKAFSVICSGLITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVIIGMYFLFRLIQYIKLLLV
HHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LVKGDLEEMKEEIKTEDIKRFNRDGTIFTVLLMATVVLVVPLFLYLNFIGIAIWLVLFGI
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMYYAICLEKQKKTHDIQTYREIIAFTEGKKLDQIEKSCEVGKRPYQKAFSVICSGLITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVIIGMYFLFRLIQYIKLLLV
HHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA