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The map label for this gene is 226948018

Identifier: 226948018

GI number: 226948018

Start: 939034

End: 939456

Strand: Reverse

Name: 226948018

Synonym: CLM_0879

Alternate gene names: NA

Gene position: 939456-939034 (Counterclockwise)

Preceding gene: 226948030

Following gene: 226948017

Centisome position: 22.61

GC content: 27.9

Gene sequence:

>423_bases
ATGAATTTTGGTGAATTTTTTAAAAATATTAGAAAAGAAAAAGGACTATCTCAAAGGCAACTTGCTGAACTCTCTCATAT
AAGCAACACAGAGATTTCTCGTATAGAATCTGGTGAACGACAAAATCCCTCCCCTAATATACTAAAATCAATAGCCCCTC
ATCTTGGAATAAGTTATGGAGAATTAATGATTAAAGCGGGCTATATAGATGAAAGCATAGAACATGAAAAATACACTGAA
CATATTTTTAGAAATTCTGATGGAGAATTTGCTGATACAATAAAATTAGCAAAAAATATTCACGATAAAGACTCTGAAAT
TTTAACTATTATGAATAGAGTTACCTCTGAATTACCTAAGGAAGATATCAAAGCAATAAAAGAATTTGCAAATTTTTATT
TAAATAAAAACAATAATAAATAA

Upstream 100 bases:

>100_bases
TCTTATCAGATATCGTAACCTATTGTCAAACCTATTAACGTTTTTCTATTGCCTATTGGTAACACTTATTGTATAATTAT
TTTGTAGGAGGATGTATATT

Downstream 100 bases:

>100_bases
TTATTTGTTCTTGTTTTTCCTTTACTTGGTAATAATTTCATATTATAATATAATTACGGAACGTTTGTTCTTTTATAATA
TGGAGGTATAGCATGGCTAA

Product: putative DNA-binding protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNFGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGELMIKAGYIDESIEHEKYTE
HIFRNSDGEFADTIKLAKNIHDKDSEILTIMNRVTSELPKEDIKAIKEFANFYLNKNNNK

Sequences:

>Translated_140_residues
MNFGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGELMIKAGYIDESIEHEKYTE
HIFRNSDGEFADTIKLAKNIHDKDSEILTIMNRVTSELPKEDIKAIKEFANFYLNKNNNK
>Mature_140_residues
MNFGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGELMIKAGYIDESIEHEKYTE
HIFRNSDGEFADTIKLAKNIHDKDSEILTIMNRVTSELPKEDIKAIKEFANFYLNKNNNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16126; Mature: 16126

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYG
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
ELMIKAGYIDESIEHEKYTEHIFRNSDGEFADTIKLAKNIHDKDSEILTIMNRVTSELPK
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
EDIKAIKEFANFYLNKNNNK
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNFGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYG
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
ELMIKAGYIDESIEHEKYTEHIFRNSDGEFADTIKLAKNIHDKDSEILTIMNRVTSELPK
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
EDIKAIKEFANFYLNKNNNK
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA