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The map label for this gene is licT [H]

Identifier: 226947909

GI number: 226947909

Start: 826616

End: 827455

Strand: Direct

Name: licT [H]

Synonym: CLM_0767

Alternate gene names: 226947909

Gene position: 826616-827455 (Clockwise)

Preceding gene: 226947906

Following gene: 226947910

Centisome position: 19.89

GC content: 22.74

Gene sequence:

>840_bases
ATGGTAATAAACAAGATTTTAAATAATAATGCTGTAATAACATTTGATGATAAAGGAAAAGAAATAATTATAATGGGCAA
AGGAATAGCCTATGGTAAGAGAAAAGGTGATTTTATTGAAGAAAGTAAAATTACCAAGAAATTCATTTTAAGTTCTATGG
AATATTCCAATCATCTTGTTGATATTTTAAGTAGTATTCCTACAGAATATATTGAACTTTGCCATGACATTGTACAATAT
GCAAAACAGAAATTATCTATAGAACTTGATGATTCATTGTATATTTCTTTGATGGATCATATGACTACTAGTATTGAACG
ATATAATAAAGGAGTTATACTAAAGAATAAGTTATTATGGGAAATAAAACATTTTTATAAAAACGAATATGAGATTGGAT
TATATGGAATTGATATTATTAAAAAAAATTATGGTTTGACTATGGATGAAGATGAAGCTGGTTTTATAGCACTTCATATT
GTTAGTGCTGAAGTCAGCAATAATATTAAGGATGTATATGAGATAACTGGATTTATACAAAATATTATAAATATTATTAA
ATATTATTTTAATCGTGACTTTAATACAGATTCATATAATTATTATCGGTTTATTACTCATTTAAAATTTTTTGGATATA
GAGTTTTTTCAAAAAAATCTAATAAAAATGATAGTATTAATAATAATCTGTTAGATATTATAAAAGAAGAATATAAGGAA
GCTTATTTATGCAGCTTGAAGATAAAACAATTCATTGAAAAAAAGTATTATTTTTATTTAAATGAAGATGAGATTCTATA
TCTTACAATACATATTGCAAAGCTTATAAGTGATAAATAA

Upstream 100 bases:

>100_bases
AGATATGGATTGTAATAGTGATTAGCTTGCTACACAAAACCTATTTACAGATATTTTGTTATGTCTGGAAATAGGTTTTT
TTGCTTTGGGGGAGGTTTTT

Downstream 100 bases:

>100_bases
ATGCAATTTATAGGAGTTTTATAATTAGTGATAATGCTTATGTATTTCACACACTTTCTATATTTTTTTACATAAGAGTT
AGATAATTTTTTAATAAATC

Product: transcriptional antiterminator, LicT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHMTTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNIINIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDK

Sequences:

>Translated_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHMTTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNIINIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDK
>Mature_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHMTTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNIINIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDK

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=38.9090909090909, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32949; Mature: 32949

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHMTTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NIINIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDK
HHHHHHHHHHHHHHHEEEEECCCCEEEEEEEHHHHHCCC
>Mature Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHMTTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NIINIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDK
HHHHHHHHHHHHHHHEEEEECCCCEEEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]