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The map label for this gene is rpfG [H]

Identifier: 226947630

GI number: 226947630

Start: 504420

End: 505496

Strand: Direct

Name: rpfG [H]

Synonym: CLM_0467

Alternate gene names: 226947630

Gene position: 504420-505496 (Clockwise)

Preceding gene: 226947628

Following gene: 226947631

Centisome position: 12.14

GC content: 27.58

Gene sequence:

>1077_bases
ATGGGTTATGAGGTGTTTATGATAATGCGACTTGAATTTATTAATAGAGTTAAAGAAAATGATGTTTTAGGAAGAAATAT
TTTTTCCGAAGATGGACAAGTTTTACTTAAATCTGGTATTAAGTTAACAGGAAATTACATAAAAAAATTAAAAAATCTAG
GCGTTTTTTATATTTATATACGGGATGAAAGATTAGAAGATGTAGTAATAGATGATCCTAAATTAATGGAACTTAAGCAA
ACTACTATGAAATCTATGACTGACCTTATGAAAAACATACATGATTTTAATGGTAAAAGCTTAAAGAGGTCCTTTAATCA
AGTGGAAGAAATGATAGATTATATAATAGATATGGGGGATGTAAATAGAAGTCTTTATGATATTAAAACCTATGATAATT
ATACATATATACATAGCTTAGATACTTGTATAATGACTACATTTATAGGCTTATCTAGTGGATTAAATGAAAAGGAATTA
AAGGATGTAGGTATAGGGGCAATACTTCACGATATAGGAAAAACTCGAATATCTAATAAAATAATAAACAAAAAAGGTCC
ATTAACAGATGATGAATTTATAGAAATAAAAAAACACCCTATTTATGGTAGTGAAATACTAAAAAAAGATTTTACAATGT
CTGATACAATTATAAAAATAGTAGAACAACATCATGAAAGAATAGACGGTAAAGGATACCCCTATGGACTTAAAAGAAAT
GACATTTCTAAATACGCAAAATTAGTTTCTATATGTGATGTATATGATGCCATAAGCAATGATAGATGTTATAGAAAGAA
ATTTACTCCTAATGATGCTTATGAGCTTATATTATCTGGATCAGGAACTATGTTTGATGAGAATTTGGTTAAATCATTTA
AAAATACCTTCGCTATATATCCTTTAGGTTGTAGGATTAGATTATCAAACGGAGAAGAAGGATATGTGATAAACCAAAAT
AAGGGGTTCCCAGATAGACCTATAGTTAGAATTTTTAGAGATAACAATAGGAAACGTTTTGGAGAGATAAATTTGCTTAA
AAGTCCTAATTTAGTTATAAGATCCCTAGTTATGTAA

Upstream 100 bases:

>100_bases
TAAGCTGATTTTATTATGGAAGGGTTTTATAAAATATAAATAAAAAGTATAAATAACAATGTTTTCTAATTATATTTGTT
ATATTTTTAGGCGGATTAAT

Downstream 100 bases:

>100_bases
AGATTCTTAATATGAGTATAAGCACAACATAAAATTTAAATTATATGTTGTGCTTATTTGTATAATAATATATATTGGGT
AATATAAAGAAAATTTTTTA

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MGYEVFMIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQ
TTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKEL
KDVGIGAILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRN
DISKYAKLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQN
KGFPDRPIVRIFRDNNRKRFGEINLLKSPNLVIRSLVM

Sequences:

>Translated_358_residues
MGYEVFMIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQ
TTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKEL
KDVGIGAILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRN
DISKYAKLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQN
KGFPDRPIVRIFRDNNRKRFGEINLLKSPNLVIRSLVM
>Mature_357_residues
GYEVFMIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQT
TMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELK
DVGIGAILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRND
ISKYAKLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQNK
GFPDRPIVRIFRDNNRKRFGEINLLKSPNLVIRSLVM

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41438; Mature: 41306

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYEVFMIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYI
CCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEHHHHHHHHHCCCEEEEEE
RDERLEDVVIDDPKLMELKQTTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGD
ECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
VNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIGAILHDIGKTRISNK
CCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRN
HHCCCCCCCCCHHEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DISKYAKLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIY
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHEEEECCCCCCHHHHHHHHHHHCEEEE
PLGCRIRLSNGEEGYVINQNKGFPDRPIVRIFRDNNRKRFGEINLLKSPNLVIRSLVM
EECEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHCC
>Mature Secondary Structure 
GYEVFMIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYI
CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEHHHHHHHHHCCCEEEEEE
RDERLEDVVIDDPKLMELKQTTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGD
ECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
VNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIGAILHDIGKTRISNK
CCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRN
HHCCCCCCCCCHHEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DISKYAKLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIY
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHEEEECCCCCCHHHHHHHHHHHCEEEE
PLGCRIRLSNGEEGYVINQNKGFPDRPIVRIFRDNNRKRFGEINLLKSPNLVIRSLVM
EECEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]