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The map label for this gene is rnfB [H]

Identifier: 226947604

GI number: 226947604

Start: 468353

End: 469186

Strand: Direct

Name: rnfB [H]

Synonym: CLM_0441

Alternate gene names: 226947604

Gene position: 468353-469186 (Clockwise)

Preceding gene: 226947603

Following gene: 226947605

Centisome position: 11.27

GC content: 38.61

Gene sequence:

>834_bases
ATGAATGAATTACTATTTCCTATATTAAGCTTAGGTGCGCTAGGTCTTGTATTCGGTGTTCTTTTAGGATATGCATCTAA
AAAATTCGCCGTAGAAGTAGACCCTAAGGTACCATTAATAAGAGATTCCCTACCAGGAGCCAACTGTGGTGGTTGTGGAT
ATGCAGGATGTGACGCATATGCACAAGCAGTAGCAGAAGGTGCTGCCCCAGCAAACGCTTGTACAGTAGGTGGAGCTTCT
GTAGCAGAAAAAGTAGCAGAAATAATGGGAGTTTCTATAGACGAATCAGAACCATTAAAAGCATACGTAAAATGTAACGG
AACTTGTGATAAAGCTAAGCAAAGAGGAGAATACTACGGAACAATGGATTGCCAACAAGCATCAGTAGTTCCAGGTGGTG
CTTCAAAATCTTGTCAAGCGGGATGTTTAGGCTTAGGTAGCTGTGTAAAGGCTTGTGCCTTTGATGCTATCCATGTAACA
GAAGGTGGAACAGCAGAAGTAGATCCAGAAAAATGCGTAGGCTGTGGAGCCTGTGTAAAAGCTTGTCCAAGAGCAGTAAT
AGATTTAAAACCATTATCAGCTGTAATTAGAGTAGCATGTAACTCTAAAGATACATTAAAAGCTGTTAAAGATGTTTGTC
AAGTAGGATGTATGACATGTAGACTATGTGAAAAAACTTGTCCAGTAAAGGCTATAACAATGGAAAACAATCTACCAGTA
GTAGATAAAGAAAAATGCGTAAAATGTATGGCATGTGTTAAAAAATGTCCTACAAATGCATTAATAGCTTATGGAAAAGA
CATAGTAGTAAAAGAAGAAAAACCAGCAAACTAG

Upstream 100 bases:

>100_bases
AAAGCAATGCAAGGACTTCCAATATCATTAATTACAGCAGGACTTATGGCAATCGCATTTTTGGGGTTCCAAGGACTACT
ACATTAGGAGGTGTAGATAG

Downstream 100 bases:

>100_bases
GTACAAAAGATAGAGTATAGAGTACAGAATATAAAGTATAGAGAAAAGATAACAGAGTATATAAAAAAAGAGTTAAGTAA
AATTTTTTACTTAACTCTTT

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNELLFPILSLGALGLVFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAYAQAVAEGAAPANACTVGGAS
VAEKVAEIMGVSIDESEPLKAYVKCNGTCDKAKQRGEYYGTMDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVT
EGGTAEVDPEKCVGCGACVKACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPV
VDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN

Sequences:

>Translated_277_residues
MNELLFPILSLGALGLVFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAYAQAVAEGAAPANACTVGGAS
VAEKVAEIMGVSIDESEPLKAYVKCNGTCDKAKQRGEYYGTMDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVT
EGGTAEVDPEKCVGCGACVKACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPV
VDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN
>Mature_277_residues
MNELLFPILSLGALGLVFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAYAQAVAEGAAPANACTVGGAS
VAEKVAEIMGVSIDESEPLKAYVKCNGTCDKAKQRGEYYGTMDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVT
EGGTAEVDPEKCVGCGACVKACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPV
VDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=193, Percent_Identity=34.1968911917098, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- InterPro:   IPR012285 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28593; Mature: 28593

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELLFPILSLGALGLVFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHH
AQAVAEGAAPANACTVGGASVAEKVAEIMGVSIDESEPLKAYVKCNGTCDKAKQRGEYYG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCC
TMDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVTEGGTAEVDPEKCVGCGACVK
CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCEEECCCCCCCCCHHHHHCHHHHHH
ACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPV
HHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
VDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN
CCHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCC
>Mature Secondary Structure
MNELLFPILSLGALGLVFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHH
AQAVAEGAAPANACTVGGASVAEKVAEIMGVSIDESEPLKAYVKCNGTCDKAKQRGEYYG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCC
TMDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVTEGGTAEVDPEKCVGCGACVK
CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCEEECCCCCCCCCHHHHHCHHHHHH
ACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPV
HHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
VDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN
CCHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA