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The map label for this gene is rnfA [H]

Identifier: 226947603

GI number: 226947603

Start: 467761

End: 468339

Strand: Direct

Name: rnfA [H]

Synonym: CLM_0440

Alternate gene names: 226947603

Gene position: 467761-468339 (Clockwise)

Preceding gene: 226947602

Following gene: 226947604

Centisome position: 11.26

GC content: 30.57

Gene sequence:

>579_bases
ATGAAAATATTTGCTTTGATTATATCAGCGTTATTTGTTAATAACTTCGTTTTAGCAAGATTTTTAGGAATATGTTCTTT
CCTTGGTGTTTCAAAAAAAGTTGAAACTGCTACAGGAATGGGACTTGCAGTTACATTTGTTATGGCATTAGCATCACTTA
TATCTTATATAGTATATAATGCTATACTTGTACCACTTAATATAACTTACTTATATACTATAGCTTTTATATTAGTTATA
GCAGCATTAGTTCAATTTGTTGAAATGGTTATTAAAAAGAAAAGTCCAGGGCTTTACAAAGCTTTAGGAATATTCTTACC
ACTTATAACTACAAACTGTGCTATATTAGGTGCAGTTATTATAAACATGAATGATAAACTTAATTTAATAGAATCACTAA
TATTTGGAACTTTCTCAGGGGTAGGATATATGCTTGCAATAGTTCTTTTAGCAGGTTTAAGAGAAAGAATGGAAGCATGC
GATAAAATGCCTAAAGCAATGCAAGGACTTCCAATATCATTAATTACAGCAGGACTTATGGCAATCGCATTTTTGGGGTT
CCAAGGACTACTACATTAG

Upstream 100 bases:

>100_bases
GAATATTAATGGCAATAATAAACAATATGAAATTAAAGAAAGCTAAATAACCAAGAGAAGGAATTTAAAATATCCTTATT
AAGAAAGAAGGGTGAAAAGT

Downstream 100 bases:

>100_bases
GAGGTGTAGATAGATGAATGAATTACTATTTCCTATATTAAGCTTAGGTGCGCTAGGTCTTGTATTCGGTGTTCTTTTAG
GATATGCATCTAAAAAATTC

Product: RnfABCDGE type electron transport complex subunit A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKIFALIISALFVNNFVLARFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGAVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMQGLPISLITAGLMAIAFLGFQGLLH

Sequences:

>Translated_192_residues
MKIFALIISALFVNNFVLARFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGAVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMQGLPISLITAGLMAIAFLGFQGLLH
>Mature_192_residues
MKIFALIISALFVNNFVLARFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGAVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMQGLPISLITAGLMAIAFLGFQGLLH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=187, Percent_Identity=55.6149732620321, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1787919, Length=159, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20718; Mature: 20718

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFALIISALFVNNFVLARFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
AILVPLNITYLYTIAFILVIAALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGAVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEACDKMPKAMQGLPISLITAGLM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAFLGFQGLLH
HHHHHHHHHHCC
>Mature Secondary Structure
MKIFALIISALFVNNFVLARFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
AILVPLNITYLYTIAFILVIAALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGAVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEACDKMPKAMQGLPISLITAGLM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAFLGFQGLLH
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA