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The map label for this gene is yxdJ [H]

Identifier: 226947549

GI number: 226947549

Start: 407255

End: 407947

Strand: Direct

Name: yxdJ [H]

Synonym: CLM_0386

Alternate gene names: 226947549

Gene position: 407255-407947 (Clockwise)

Preceding gene: 226947548

Following gene: 226947550

Centisome position: 9.8

GC content: 27.42

Gene sequence:

>693_bases
ATGAATTATAAAATATATATTATAGAAGATGATTTATCAATAAGCTTATTGTTAAAAGACTATATTACTAAATATGGATT
TAATGTAAAGATAGCAGAAAACTTTGAAAATATAATGGCGGATTTTAACGAATTTAATCCTGATGTAGTATTATTAGATG
TGAACTTACCAAAATATGATGGATTTTATTGGTGTAGAAGGATAAGACAGAAATCAAAAATACCTATAATTTTTATATCA
GCTAGAGATAGTGGAATGGATCAGGTAATGGCACTTGAAAACGGAGCTGATGATTATATAATTAAGCCTTTTTATTGTGA
TGTTATTATGGCTAAGATAAAAAGTCATATAAGAAGAGCTTTTGGAGAGTATGCACCAAAAGTTGATGAAAAAATAGTGG
AACTTCAAGGATTGAAATTTTATAAAGAGAGATCTGAAATAGAGTTTAAAGATGAAAGAGTGATTATAACTAAAAAGGAA
GGGATATTATTAGAATATCTTATGAAAAAATATCCTAAAGTTGTAAATAGGGATTTCCTTTTAGAAAAAATATGGGATGA
TATTGAGTTTGTAGAAGAGAATACATTGAATGTTAATGTAAGTAGAATAAGAAAAAGACTTCATGAGTTAGGAATAGAAG
ACGGAATAGAAACCGTAAGAGGTGTGGGATATAGATTGAATAAAACTTGGTAG

Upstream 100 bases:

>100_bases
TTATATTTAGAGATTAAAAAGATTCATATAAATACAATGAAAACACATATGGATATTGGTATAATTAATGTAATCCTATA
ATGAATAAGGAGAAAATGAT

Downstream 100 bases:

>100_bases
GGAGCAGAAAAAATGAAGTTATTTATAAAAGACAATAAAGGATATATAGTTGTATATTTTATAAGTATTTTTATTACATT
GGGATACTTAGCTCTTTCAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNLPKYDGFYWCRRIRQKSKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNKTW

Sequences:

>Translated_230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNLPKYDGFYWCRRIRQKSKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNKTW
>Mature_230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNLPKYDGFYWCRRIRQKSKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNKTW

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=32.1739130434783, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=31.981981981982, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=32.15859030837, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=30.9417040358744, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=27.7533039647577, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=29.9559471365639, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=28.8288288288288, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=31.2775330396476, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=30.9734513274336, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=30.8370044052863, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=25.6756756756757, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=25.5506607929515, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=26.7543859649123, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=27.0386266094421, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790299, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788550, Length=105, Percent_Identity=32.3809523809524, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=30.7017543859649, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27290; Mature: 27290

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNLPKYD
CCEEEEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GFYWCRRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRA
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHH
FGEYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFL
HHHHCCHHHHHHHHHHCHHHHHHCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHCHHHH
LEKIWDDIEFVEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNKTW
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCEEECCCC
>Mature Secondary Structure
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNLPKYD
CCEEEEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GFYWCRRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRA
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHH
FGEYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFL
HHHHCCHHHHHHHHHHCHHHHHHCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHCHHHH
LEKIWDDIEFVEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNKTW
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]