Click here to switch to the map view.

The map label for this gene is panD [H]

Identifier: 226947534

GI number: 226947534

Start: 363192

End: 363575

Strand: Direct

Name: panD [H]

Synonym: CLM_0370

Alternate gene names: 226947534

Gene position: 363192-363575 (Clockwise)

Preceding gene: 226947533

Following gene: 226947535

Centisome position: 8.74

GC content: 28.12

Gene sequence:

>384_bases
ATGAAAATATGTATGCTAAAAGGAAAAATCCATAGAGTTGTAGTTACTGAAGCTAATCTTAACTATGTAGGTAGTATAAC
AATTGATGAAGAATTGATAGAGAAAGCAGGAATAAATGAATATGAAAAAGTTCAAATAGTTGATATAGATAATGGTAATA
GATTTGATACTTATGTAATAGCAGGAAGAAGATATAGTGGAGTTATATGCTTAAATGGAGCAGCTGCTAGATGTGTACAA
AAAGGAGATAAGATAATAATTATGGCTTATTGTGACCTTGAAGAAGAAGAAGTGAAAACACATAAACCGAAAGTTATTTT
TGTTAATGAAGATAATACAATTAAAGAAGTTGGATACTATGAGAAACATGGACAAATAAAATAA

Upstream 100 bases:

>100_bases
TGATTTCAATATTTAATATTACAGTTGCGAGCTATATTATAATAAGAACATTAAATTTAACGTAATAATTGAATTATATT
ATTTTGAGAGGAGATTAAGA

Downstream 100 bases:

>100_bases
TATAGTACTCATATCTTTGGCGCTTCTAAAATATGAATTTGGCTGTTCTTATATAGAACACCAATAACAGAAGGTTTATA
TTTACCATAGATGAGAAATG

Product: aspartate alpha-decarboxylase

Products: NA

Alternate protein names: Aspartate alpha-decarboxylase [H]

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKICMLKGKIHRVVVTEANLNYVGSITIDEELIEKAGINEYEKVQIVDIDNGNRFDTYVIAGRRYSGVICLNGAAARCVQ
KGDKIIIMAYCDLEEEEVKTHKPKVIFVNEDNTIKEVGYYEKHGQIK

Sequences:

>Translated_127_residues
MKICMLKGKIHRVVVTEANLNYVGSITIDEELIEKAGINEYEKVQIVDIDNGNRFDTYVIAGRRYSGVICLNGAAARCVQ
KGDKIIIMAYCDLEEEEVKTHKPKVIFVNEDNTIKEVGYYEKHGQIK
>Mature_127_residues
MKICMLKGKIHRVVVTEANLNYVGSITIDEELIEKAGINEYEKVQIVDIDNGNRFDTYVIAGRRYSGVICLNGAAARCVQ
KGDKIIIMAYCDLEEEEVKTHKPKVIFVNEDNTIKEVGYYEKHGQIK

Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine [H]

COG id: COG0853

COG function: function code H; Aspartate 1-decarboxylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the panD family [H]

Homologues:

Organism=Escherichia coli, GI1786323, Length=114, Percent_Identity=44.7368421052632, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR003190
- ProDom:   PD009294 [H]

Pfam domain/function: PF02261 Asp_decarbox [H]

EC number: =4.1.1.11 [H]

Molecular weight: Translated: 14411; Mature: 14411

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKICMLKGKIHRVVVTEANLNYVGSITIDEELIEKAGINEYEKVQIVDIDNGNRFDTYVI
CEEEEEECCEEEEEEEECCCCEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEEEEE
AGRRYSGVICLNGAAARCVQKGDKIIIMAYCDLEEEEVKTHKPKVIFVNEDNTIKEVGYY
ECCCCCCEEEECCHHHHHHHCCCEEEEEEEECCCHHHHHCCCCEEEEECCCCCEEECCEE
EKHGQIK
CCCCCCC
>Mature Secondary Structure
MKICMLKGKIHRVVVTEANLNYVGSITIDEELIEKAGINEYEKVQIVDIDNGNRFDTYVI
CEEEEEECCEEEEEEEECCCCEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEEEEE
AGRRYSGVICLNGAAARCVQKGDKIIIMAYCDLEEEEVKTHKPKVIFVNEDNTIKEVGYY
ECCCCCCEEEECCHHHHHHHCCCEEEEEEEECCCHHHHHCCCCEEEEECCCCCEEECCEE
EKHGQIK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA