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The map label for this gene is ykcC [H]

Identifier: 226947521

GI number: 226947521

Start: 343637

End: 344605

Strand: Direct

Name: ykcC [H]

Synonym: CLM_0355

Alternate gene names: 226947521

Gene position: 343637-344605 (Clockwise)

Preceding gene: 226947520

Following gene: 226947522

Centisome position: 8.27

GC content: 29.31

Gene sequence:

>969_bases
GTGATTAATAAAATAGTTTATTCCATAATAGTTCCTTTATATAATGAAGAGCTTGTTATTGATGAAAGCTATAGAAGATT
AAAGGAAGTTATGGATTCTACAAAAGAAAATTATGAAATTATATTTATAAATGATGGAAGTAGAGATTCAACTAAAGAAA
AAGCAGATAACATATGTAAAAAGGATGAAAAAATAAAACTTGTAAATTTTTCTAGAAATTTTGGCCATCAAGCTGCCATA
ACTGCGGGAATGGATGTATCTAGAGGTAGGGCTATTGTGGTAATTGATGCGGATCTTCAAGATCCACCAGAGGTTATTCT
TAAAATGATTGAAAAATGGAAAGATGGGTACGAAGTAATATATGGAAAAAGGGCTAAAAGAGAAGGGGAAGGATTTTTTA
AAAAATTTACTGCTGGGATGTTTTATAGACTGTTAAAAAACATAACAAATATAGACATTCCAGTGGATACAGGAGATTTT
AGGCTTATAGATAGAAAAGTATGTGATACCTTAACATCACTTCCAGAAAAAAATAGATACGTAAGAGGATTGGTAAGTTG
GGTTGGGTATAAACAAACTGCAGTAGAATTCGTAAGACAAGAAAGATTTGCTGGAGAGACTAAATATCCATTAAAGAAGA
TGCTTAAATTAGCCTTTGATGGAATAACATCCTTTTCATATAAACCACTTACAGTCGCTAGCTATGTTGGAGGGACAATA
TTTTCTATAGGTACTATTGTATTTATAACTGAAATTATAAAGGCAGTAATAAACTGTACAGATATATTAAGTTTAGGAAT
GATATTATCAATTAATTTAATTATGTTTGGATTGATATTTTTTACCATTGGCATAATGGGCCAATATATTGGAAGAATTT
TCGATGAAAGTAAGAATAGGCCCATGTATATAATCGATAATACTATAAATTATAAGAAGGTTGATAAAAAATATGAAATT
AATGACTAA

Upstream 100 bases:

>100_bases
TTTTAAATAAGGAAAGTTTAAAGGCAGCTTAATTTTAATAAATGATTTAAAAAATCAGTTTAAAGACATAATCAAATAAC
AATTTTATGAGGTGATAAAT

Downstream 100 bases:

>100_bases
AGTAAACAAATGTATATTCCATGGCAAATTTAAACATATAAGTCGTTTTTCAATAGTAGGTGTTGCAAATACTGGCATAG
ACTTTTTAATGTTTACAATA

Product: group 2 family glycosyl transferase

Products: GDP; dolichyl D-mannosyl phosphate

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MINKIVYSIIVPLYNEELVIDESYRRLKEVMDSTKENYEIIFINDGSRDSTKEKADNICKKDEKIKLVNFSRNFGHQAAI
TAGMDVSRGRAIVVIDADLQDPPEVILKMIEKWKDGYEVIYGKRAKREGEGFFKKFTAGMFYRLLKNITNIDIPVDTGDF
RLIDRKVCDTLTSLPEKNRYVRGLVSWVGYKQTAVEFVRQERFAGETKYPLKKMLKLAFDGITSFSYKPLTVASYVGGTI
FSIGTIVFITEIIKAVINCTDILSLGMILSINLIMFGLIFFTIGIMGQYIGRIFDESKNRPMYIIDNTINYKKVDKKYEI
ND

Sequences:

>Translated_322_residues
MINKIVYSIIVPLYNEELVIDESYRRLKEVMDSTKENYEIIFINDGSRDSTKEKADNICKKDEKIKLVNFSRNFGHQAAI
TAGMDVSRGRAIVVIDADLQDPPEVILKMIEKWKDGYEVIYGKRAKREGEGFFKKFTAGMFYRLLKNITNIDIPVDTGDF
RLIDRKVCDTLTSLPEKNRYVRGLVSWVGYKQTAVEFVRQERFAGETKYPLKKMLKLAFDGITSFSYKPLTVASYVGGTI
FSIGTIVFITEIIKAVINCTDILSLGMILSINLIMFGLIFFTIGIMGQYIGRIFDESKNRPMYIIDNTINYKKVDKKYEI
ND
>Mature_322_residues
MINKIVYSIIVPLYNEELVIDESYRRLKEVMDSTKENYEIIFINDGSRDSTKEKADNICKKDEKIKLVNFSRNFGHQAAI
TAGMDVSRGRAIVVIDADLQDPPEVILKMIEKWKDGYEVIYGKRAKREGEGFFKKFTAGMFYRLLKNITNIDIPVDTGDF
RLIDRKVCDTLTSLPEKNRYVRGLVSWVGYKQTAVEFVRQERFAGETKYPLKKMLKLAFDGITSFSYKPLTVASYVGGTI
FSIGTIVFITEIIKAVINCTDILSLGMILSINLIMFGLIFFTIGIMGQYIGRIFDESKNRPMYIIDNTINYKKVDKKYEI
ND

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=172, Percent_Identity=30.2325581395349, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1788692, Length=298, Percent_Identity=40.2684563758389, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1788588, Length=311, Percent_Identity=27.9742765273312, Blast_Score=146, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6325441, Length=112, Percent_Identity=33.0357142857143, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.83

Molecular weight: Translated: 36985; Mature: 36985

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKIVYSIIVPLYNEELVIDESYRRLKEVMDSTKENYEIIFINDGSRDSTKEKADNICK
CCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHC
KDEKIKLVNFSRNFGHQAAITAGMDVSRGRAIVVIDADLQDPPEVILKMIEKWKDGYEVI
CCCCEEEEEECCCCCCCHHEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHH
YGKRAKREGEGFFKKFTAGMFYRLLKNITNIDIPVDTGDFRLIDRKVCDTLTSLPEKNRY
HCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
VRGLVSWVGYKQTAVEFVRQERFAGETKYPLKKMLKLAFDGITSFSYKPLTVASYVGGTI
HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHH
FSIGTIVFITEIIKAVINCTDILSLGMILSINLIMFGLIFFTIGIMGQYIGRIFDESKNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PMYIIDNTINYKKVDKKYEIND
CEEEEECCCCHHHCCCCCCCCC
>Mature Secondary Structure
MINKIVYSIIVPLYNEELVIDESYRRLKEVMDSTKENYEIIFINDGSRDSTKEKADNICK
CCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHC
KDEKIKLVNFSRNFGHQAAITAGMDVSRGRAIVVIDADLQDPPEVILKMIEKWKDGYEVI
CCCCEEEEEECCCCCCCHHEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHH
YGKRAKREGEGFFKKFTAGMFYRLLKNITNIDIPVDTGDFRLIDRKVCDTLTSLPEKNRY
HCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
VRGLVSWVGYKQTAVEFVRQERFAGETKYPLKKMLKLAFDGITSFSYKPLTVASYVGGTI
HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHH
FSIGTIVFITEIIKAVINCTDILSLGMILSINLIMFGLIFFTIGIMGQYIGRIFDESKNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PMYIIDNTINYKKVDKKYEIND
CEEEEECCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPmannose; dolichyl phosphate

Specific reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]