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The map label for this gene is polC [H]

Identifier: 226947476

GI number: 226947476

Start: 296978

End: 297907

Strand: Direct

Name: polC [H]

Synonym: CLM_0308

Alternate gene names: 226947476

Gene position: 296978-297907 (Clockwise)

Preceding gene: 226947475

Following gene: 226947477

Centisome position: 7.15

GC content: 28.17

Gene sequence:

>930_bases
ATGAATTTTGTAGCTATAGATTTTGAAACTGCTAATGAAAAAAGAAATAGTCCATGCTCTATAGGTATCGTGGTTGTGAA
GGATGGGGAGATTGTAGAAAAAGTACATTATTTAATAAAGCCTAAGGAAATGAGATTTATGCCAATAAATATTGGAATTC
ATGGAATAAGGCCGCATATGGTCCAGGATGAATTAGAATTTGATAAAATATGGGGAAAAATTAAGGGCTATTTTAATAAT
AATTTAGTAATAGCTCATAATGCTTCCTTTGATATGTCTGTATTAAGGAGTACATTAAAACTTTATAATATAAAAATGCC
AAGTTTTGAGTATATATGTACAATGAAGCTCTCTAAAAATTTTTATAGTAACATTGATAATGCAAGATTAAATACAGTAA
ATAATTTTTTGGGGTACAAGTTTAAACATCATGATGCTCTGGCAGATGCAATGGCATGTAGTAATATTTTAATTAATATA
TCAAAGGAATTAAATTCAAAGGATATTAATGAAATATCAAAATTAATTGGAGTGACTTTAGGATATATAAATGAAAATGG
ATATAAACCATCTTCCACTAAAGGAAGGATTTTAAAAAGATCTAATAGACAATCTCCAAGGGAAAATAAAAAGATAATAG
AAAGCTTTAATTTCACTGCATTTAAAGAAGAGGTTGTTGTATTTACAGGTGGATTAGCTTCTATGACAAGAAATGAAGCA
ATGATATTAGTTGGAAAGCTTAATGGAACTGTTGGAAGCTCCGTAACTAAGAAGACAACATACTTAGTTACAAATACAAA
GGACATAGAGGATTTAAATAGAGAAGAAATGAGCAATAAGCTTAAGAAAGCCATAGATTTAAAGAAAAAAGGTCAGAATA
TAAAGTTTTTAAATGAGGAAGCATTCCTACAAAAATGTAAAGAAAAATAA

Upstream 100 bases:

>100_bases
ATAAGGGTGTTGTAATATTAAGATATTCAAAAAGATAAATATATATTCATAAAGGAATGGCTAGTTTATTAAGCAAGAAT
ATAAATGTAGGAGAAGATAA

Downstream 100 bases:

>100_bases
CAAATTGGATCACCCAAGTTTTAAGCAAAGAGAAGAATCCATTTGTACAATAGCTCATTAAAAAGTAGTTTTAAGATGAT
TTCTTTATTCTATTTTGGCA

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNFVAIDFETANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWGKIKGYFNN
NLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINI
SKELNSKDINEISKLIGVTLGYINENGYKPSSTKGRILKRSNRQSPRENKKIIESFNFTAFKEEVVVFTGGLASMTRNEA
MILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEAFLQKCKEK

Sequences:

>Translated_309_residues
MNFVAIDFETANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWGKIKGYFNN
NLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINI
SKELNSKDINEISKLIGVTLGYINENGYKPSSTKGRILKRSNRQSPRENKKIIESFNFTAFKEEVVVFTGGLASMTRNEA
MILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEAFLQKCKEK
>Mature_309_residues
MNFVAIDFETANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWGKIKGYFNN
NLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINI
SKELNSKDINEISKLIGVTLGYINENGYKPSSTKGRILKRSNRQSPRENKKIIESFNFTAFKEEVVVFTGGLASMTRNEA
MILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEAFLQKCKEK

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP; PF01336 tRNA_anti [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 35210; Mature: 35210

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50172 BRCT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFVAIDFETANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHM
CCEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCEEEEEEECEEECCCCCH
VQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN
HHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHH
FYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKLIGVTL
HHCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHHHHHHHH
GYINENGYKPSSTKGRILKRSNRQSPRENKKIIESFNFTAFKEEVVVFTGGLASMTRNEA
EEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEEECEEEEEECCHHHHCCCCE
MILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEE
EEEEEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEECHH
AFLQKCKEK
HHHHHHHCC
>Mature Secondary Structure
MNFVAIDFETANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHM
CCEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCEEEEEEECEEECCCCCH
VQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKN
HHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHH
FYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKLIGVTL
HHCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHHHHHHHH
GYINENGYKPSSTKGRILKRSNRQSPRENKKIIESFNFTAFKEEVVVFTGGLASMTRNEA
EEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEEECEEEEEECCHHHHCCCCE
MILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEE
EEEEEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEECHH
AFLQKCKEK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]