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The map label for this gene is 226947439

Identifier: 226947439

GI number: 226947439

Start: 252263

End: 253102

Strand: Direct

Name: 226947439

Synonym: CLM_0268

Alternate gene names: NA

Gene position: 252263-253102 (Clockwise)

Preceding gene: 226947438

Following gene: 226947440

Centisome position: 6.07

GC content: 30.48

Gene sequence:

>840_bases
ATGGAGAAGATAAAAATTATAACAGATAGCACTGCTGATTTACCTAAGAACATAATAGAAAAATATGATATAGAGGTAAT
ACCTTTATTTGTAAGTTTTGGCGATAAAGTTTACAAAGATGGCGTAGATATAAAATTAGAGCAGTTGTTTACTAAAATAG
AAAAGGAAAATGTGTTTCCACAAACTTCTCAAGTAAATCCTCAGAGATTTTATGAATATTATAAAAAATATATAGATAAA
GGATACAGTATAATTTCTATACATATATCTTCTAAAATGAGCGGCACTTATCAATCAGCATGCTTAGCAAAAGATATGTT
AGATAGTGATAATATTACAGTTATAGATAGCAATAATGTAACATCAGGCTTAGGCCTTTTAGTTATTAAGGCTTGCAAAT
TAAAAGATGAAGGACTTTCTATGGAGGAAATAGTAAAAGGTGTAAAAGAAACTATACCGCACATTAAAAGTGTACTAGCA
TTTGAAACTTTAGATTATTTAGTAAAGGGAGGAAGACTCTCAAAAACAGCAGGCTTTATAGGGAATGTGTTAGGAATAAA
ACCAATATTAGCAGTAGAGAATGGGGAAATGGTAGTTAAAGATAAAGTAAGGGGTAGCAAAAAAGCTATAAGAGCTATAT
TTGAATATATAGGTAAATTAGGTCTAAAGCAAGGTGAACCTTGCGTTTTATTACATGTGCAAAATAAAGATATACTAGGA
ACTTTGAGAGAAAATTTAAACCAAGATGAAGCTAATTTTATAGAGTGTACGGTAGGGTGCGTAGTAGGAATCTATGCTGG
ACCTAGAGCTTGTGGCATATTTTTTATAGAGGATTATTAA

Upstream 100 bases:

>100_bases
AACTACTAGGTCTTTAAATTTGTCTAATACTGTAGCTGTAGTTACCTATGAAGCTTTAAGACAAGTTGGTTTCCCAGATA
TGAAATAGGAGGAGCTTAAC

Downstream 100 bases:

>100_bases
TAAAATACTTTTCAAGCTATATTTCGATCATAGAGATGTAGCTTATTATTTAAAATTTACGTATACGTTTACTTGTGTTA
AATCTAATAAATTATTTAGA

Product: DegV family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MEKIKIITDSTADLPKNIIEKYDIEVIPLFVSFGDKVYKDGVDIKLEQLFTKIEKENVFPQTSQVNPQRFYEYYKKYIDK
GYSIISIHISSKMSGTYQSACLAKDMLDSDNITVIDSNNVTSGLGLLVIKACKLKDEGLSMEEIVKGVKETIPHIKSVLA
FETLDYLVKGGRLSKTAGFIGNVLGIKPILAVENGEMVVKDKVRGSKKAIRAIFEYIGKLGLKQGEPCVLLHVQNKDILG
TLRENLNQDEANFIECTVGCVVGIYAGPRACGIFFIEDY

Sequences:

>Translated_279_residues
MEKIKIITDSTADLPKNIIEKYDIEVIPLFVSFGDKVYKDGVDIKLEQLFTKIEKENVFPQTSQVNPQRFYEYYKKYIDK
GYSIISIHISSKMSGTYQSACLAKDMLDSDNITVIDSNNVTSGLGLLVIKACKLKDEGLSMEEIVKGVKETIPHIKSVLA
FETLDYLVKGGRLSKTAGFIGNVLGIKPILAVENGEMVVKDKVRGSKKAIRAIFEYIGKLGLKQGEPCVLLHVQNKDILG
TLRENLNQDEANFIECTVGCVVGIYAGPRACGIFFIEDY
>Mature_279_residues
MEKIKIITDSTADLPKNIIEKYDIEVIPLFVSFGDKVYKDGVDIKLEQLFTKIEKENVFPQTSQVNPQRFYEYYKKYIDK
GYSIISIHISSKMSGTYQSACLAKDMLDSDNITVIDSNNVTSGLGLLVIKACKLKDEGLSMEEIVKGVKETIPHIKSVLA
FETLDYLVKGGRLSKTAGFIGNVLGIKPILAVENGEMVVKDKVRGSKKAIRAIFEYIGKLGLKQGEPCVLLHVQNKDILG
TLRENLNQDEANFIECTVGCVVGIYAGPRACGIFFIEDY

Specific function: Unknown

COG id: COG1307

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DegV domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003797 [H]

Pfam domain/function: PF02645 DegV [H]

EC number: NA

Molecular weight: Translated: 31050; Mature: 31050

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKIITDSTADLPKNIIEKYDIEVIPLFVSFGDKVYKDGVDIKLEQLFTKIEKENVFP
CCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCEEHHHHHHHHHHHCCCC
QTSQVNPQRFYEYYKKYIDKGYSIISIHISSKMSGTYQSACLAKDMLDSDNITVIDSNNV
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
TSGLGLLVIKACKLKDEGLSMEEIVKGVKETIPHIKSVLAFETLDYLVKGGRLSKTAGFI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
GNVLGIKPILAVENGEMVVKDKVRGSKKAIRAIFEYIGKLGLKQGEPCVLLHVQNKDILG
HHHHCCCEEEEECCCCEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
TLRENLNQDEANFIECTVGCVVGIYAGPRACGIFFIEDY
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
>Mature Secondary Structure
MEKIKIITDSTADLPKNIIEKYDIEVIPLFVSFGDKVYKDGVDIKLEQLFTKIEKENVFP
CCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCEEHHHHHHHHHHHCCCC
QTSQVNPQRFYEYYKKYIDKGYSIISIHISSKMSGTYQSACLAKDMLDSDNITVIDSNNV
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
TSGLGLLVIKACKLKDEGLSMEEIVKGVKETIPHIKSVLAFETLDYLVKGGRLSKTAGFI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
GNVLGIKPILAVENGEMVVKDKVRGSKKAIRAIFEYIGKLGLKQGEPCVLLHVQNKDILG
HHHHCCCEEEEECCCCEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
TLRENLNQDEANFIECTVGCVVGIYAGPRACGIFFIEDY
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]