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The map label for this gene is ydcI [H]

Identifier: 226947398

GI number: 226947398

Start: 207333

End: 209489

Strand: Direct

Name: ydcI [H]

Synonym: CLM_0224

Alternate gene names: 226947398

Gene position: 207333-209489 (Clockwise)

Preceding gene: 226947396

Following gene: 226947399

Centisome position: 4.99

GC content: 30.09

Gene sequence:

>2157_bases
ATGAACAATATAAACAGTATTTTATCAAAAGAACTTAACATATCCATTAAATATATAGATGCAGTTATAGATTTATTAGA
TCAGGGAAATACAGTACCTTTTATAGCAAGATATAGAAAAGAAGTAACAGGAGGTATGAGTGACGAAACGCTTAGAGAGC
TCTTTGAAAGGCTTACGTATTTAAGAAATTTAAGTTCCAAGAAAGAGGATGTTATAAGACTCATAGAGGAACAAGGCAAA
CTTACAGAAGAGCTTAAAACATCTATAATTAATTGTAAAACTGTTACAGAAGTAGAGGATTTATATAGACCTTATAGACC
AAAAAGAAGGACAAGAGCTACTATAGCAGAAGAAAAAGGATTAAAGCCTTTAGCAGAAATAATATTAGAAGGTAATTTTA
AAGAAGATATAAAAGTATATGCTAGTGAATTCATAAATGAAGAAAAAGAAGTAAAGACTATCGAAGAAGCTCTTCAGGGT
GCTATGGATATAATAAGCGAAGTTATATCTGATGAAGCAGAATACAGAAAGTGGATAAGGAATTTTGTTTTTAATGAAGG
AGTAATAGAAACTAAAGGTGAAAGCATGGAACCTACTCCTTACGAAATGTATTATGATTATAAAGAAAATGTAAAAAATA
TTCCTCCCCATCGAATACTAGCTATAAATAGAGGAGAAAAAGAAAAAATATTAACAGCAAAAGTTACTTGTAATGAAGAT
AAAATAATAGATTATTTAAAAAGTAGATCCTTAAAAGGAAATAAGGAAACGGATGTATATATAGAGGAGTCTGTTAAAGA
TTCTTTAAAAAGATTAATATATCCATCCATAGAAAGAGAGATAAGATCAGAGTTAACAGAAAAAGGTGAAGAAGGAGCAA
TAAAAATATTTAAAGAGAATTTAAAGGCCCTTTTGATGCAAGCACCTATAAAGGATAAAGTAGTTTTAGGATATGACCCA
GGGTTTAGAACAGGATGTAAGATAGCAGTATTAGATGAAACAGGCAAATTATTAGATACAGCTACGGTTTATGCTACAGC
ACCACAAAATGATGTAGAAGGGTCTATAAAAGTATTAAAAAAATTAATATACAAATATGATGTTGATGTAATATCTTTAG
GAAATGGAACAGCTAGTAGAGAATCAGAAGAGGTTATATCAAAAATGCTTAAAGAAATAAAAGAAGAAAAAGGCAAAGAT
ATATATTATGTTATAGTATCTGAAGCAGGAGCCTCTGTTTATTCTGCGTCAAAATTAGCTACAGAAGAATATCCAGATAT
AAATGTTTCTTTAAGAGGGGCTATATCTATAGGTAGAAGACTTCAAGATCCTCTAGCAGAACTTGTAAAAATAGATCCTA
AGTCTATAGGGGTAGGACAATATCAACACGATGTATCTCAAAAAAAATTAGATGAATCATTAAAAGGTGTGGTAGAAGAT
TGTGTTAATGCGGTAGGAGTAGACTTAAATACTGCAACACCATCACTTTTATCTTATATTTCAGGCATTAATAGCTCTAT
AGCTAAAAATATAGTAGCTTATAGAGAGGAAATAGGGAAATTTAAAAATAGAAAAGAATTATTAAAAGTAAAAAGATTAG
GACAAAAAGCCTTTGAGCAATGTGCAGGTTTTCTTAGAGTTATGGAAAGTAAAGAACCTTTAGATAATACAGGAGTCCAT
CCAGAGTCCTATGAGGGAACCAAGAAGTTTTTAAGCTTGTTACAATATGATATAAAAGATGTAAAAAATAATAAATTACA
GGATATAGATGATAGGGTTAATAATATAGGACTAGATGATATATGTAATAAAATAGATATAGGGAAACCTACACTATTAG
ATATTATAAAAGAAATAAAAAAACCAGGAAGAGATCCAAGAGAAGATTTACCTAAACCTATATTAAAGACAGGGATTGTT
GATATAACTCAATTAAAGCCAGACATGGTTCTAATGGGTACCGTTAGGAATGTAGCTGATTTTGGAGCCTTTGTAGATAT
AGGAGTTCATCAAGATGGCTTAGTACATATAAGTCAACTTTCAGATAGCTTTGTAAAACATCCTTTAGATATAGTAAAAG
TGGGAGATATAGTGGAAGTTAGAATATTGGAGGTAGATCAAAAGAGAAATAGAATCTCTTTAAGCATGAAAAAATAA

Upstream 100 bases:

>100_bases
CCTATAAATTGTTTATAATTTAATTTATATTAATTTGCCAAAGGATATATAACTGGTATAATATATTTTTAGTGACTTTA
TTTAATATTTGGAGGTAAAG

Downstream 100 bases:

>100_bases
ATTATTGGATAAATATTAATATTGAATTTAAATTATTAATAGTATATAATAAAAATGCATAAAATTAATATTTATATCTT
CAGGGCGGGGTGTAATTCCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRISLSMKK

Sequences:

>Translated_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRISLSMKK
>Mature_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRISLSMKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=783, Percent_Identity=34.7381864623244, Blast_Score=425, Evalue=1e-119,
Organism=Homo sapiens, GI27597090, Length=764, Percent_Identity=21.5968586387435, Blast_Score=88, Evalue=3e-17,
Organism=Escherichia coli, GI87082262, Length=729, Percent_Identity=45.5418381344307, Blast_Score=622, Evalue=1e-179,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=44.1558441558442, Blast_Score=73, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=32.5333333333333, Blast_Score=321, Evalue=7e-88,
Organism=Caenorhabditis elegans, GI17552892, Length=264, Percent_Identity=27.6515151515151, Blast_Score=80, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6321552, Length=428, Percent_Identity=23.8317757009346, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI62484314, Length=768, Percent_Identity=33.0729166666667, Blast_Score=398, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=706, Percent_Identity=22.8045325779037, Blast_Score=102, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81153; Mature: 81153

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCHHHHHHH
KLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRISLSMKK
HCCCEEECCCCCCCEEHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCHHHHHHH
KLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRISLSMKK
HCCCEEECCCCCCCEEHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]